7000000297: Human stool microbial communities from NIH, USA - visit 2, subject 764325968

Overview

Basic Information

• IMG/M Taxon OID: 7000000297
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0052820 | Ga0030574
• Sample Name: Human stool microbial communities from NIH, USA - visit 2, subject 764325968
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 142500853
• Sequencing Scaffolds: 9
• Novel Protein Genes: 16
• Associated Families: 16

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	4
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium	4
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Bacteroidaceae → Bacteroides	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F042095	Metagenome	159	N
F050794	Metagenome	145	N
F055775	Metagenome	138	N
F057001	Metagenome	137	Y
F064725	Metagenome	128	N
F075481	Metagenome	119	N
F076653	Metagenome	118	N
F077313	Metagenome	117	N
F078005	Metagenome	117	N
F080673	Metagenome	115	N
F083451	Metagenome	113	N
F085718	Metagenome	111	N
F099451	Metagenome	103	N
F100397	Metagenome	102	N
F102167	Metagenome	102	N
F106193	Metagenome	100	N

Associated Scaffolds

Scaffold	Taxonomy	Length
C1886247	Not Available	1289
SRS056259_LANL_scaffold_15431	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium	7244
SRS056259_LANL_scaffold_20385	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Bacteroidaceae → Bacteroides	41314
SRS056259_LANL_scaffold_29436	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium	8971
SRS056259_LANL_scaffold_31883	Not Available	23580
SRS056259_LANL_scaffold_49247	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium	13413
SRS056259_LANL_scaffold_50405	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium	21373
SRS056259_LANL_scaffold_50657	Not Available	28274
SRS056259_LANL_scaffold_5938	Not Available	29349

Sequences

Scaffold ID	Protein ID	Family	Sequence
C1886247	C1886247__gene_200369	F100397	MKKLIAILVLSLSLILCLTACGSKMPYDLSETASVELHAYNNDSTEPFAKIVVDGEDVATIVEMFNSLKLKEMKYTEPSIRGYEFWFRDENGSEIVKIELPYGPSPWLVVGGTEYPYQDVNGGVDVDYLAQLVDMTISAGPMQPEDGVDHNAPVEPLFYKSAPGLSIQHDGQSVRALPGTSSWQYMNPDGTSTGIEADSMHPLDAKEYMPVLPAVEGEAWLVFDT
SRS056259_LANL_scaffold_15431	SRS056259_LANL_scaffold_15431__gene_33447	F057001	MTSKDLNKVQSEVKKASEKTLTGAVKAWCQLFKSGKEVNEILKENDIKVDKDIVPALVSLAKEKEVVIQLCKDILPRINNTFCAYKEIEREYLDKLDQDKNVKMTVDKIESIAILGTTHKRFGYNEPVEYDGGVYYDVFNGSDKRIIKCAVPIKRYTYNLIAKCITYYLTHPKNER
SRS056259_LANL_scaffold_15431	SRS056259_LANL_scaffold_15431__gene_33451	F080673	MDEIVKLQDEILSYLRNNITKDEAYYILTTDKEMIEILISDKKDGSKRIKILDMEYTIEKDDMLLLFDTDGIIDECLLTSSHIGINMYFRRQDIRDILSKKLEVMEYRYIKIQVDNIPVVEKHRVILDLTGHRVDRDDRDKIDFMFIYYMARLCE
SRS056259_LANL_scaffold_15431	SRS056259_LANL_scaffold_15431__gene_33456	F085718	MVIEFDFEIYKNGDYDKVYLRNGKEARVLCDNGKGNSPMVVMIEDDKADDYIILRYNETGRRNINGQSGLDLMLSVKEREPELWVVVISYMDNKDKRQKMVLPNFFSRGIRGYIYLQGSSKSNVSYYVGRLEKDGCFDELCEKIRVKRDRIYNMEIISLSDDETAV
SRS056259_LANL_scaffold_20385	SRS056259_LANL_scaffold_20385__gene_43992	F099451	LCPGEYASGLLIKKIMAIDKIKTVGQLRKVIENLSDDYEIEMRIRRKLSDDEIKELYNKYGRIYPYPYETQYPELEFDDIGVSDKVLCLGVELKDK
SRS056259_LANL_scaffold_29436	SRS056259_LANL_scaffold_29436__gene_62623	F076653	MTIRDKYFGWKDIFFDRFVHCCNEKSDQPQGSNIPLAKINFDNKTGYVEDGTINIAELLQYLWINNKVYGCEYAPIDISSALQTLIRLTENAKHMFEDQPGVYDMIPYRGFFLRDDFLSGKDYSLDLDKIVSGMGGWYGEDEDPCYSMFVSQDQIWNLNPILKVLADEGSILAKELGYDINSYVSDNGYTIYNPYLSWINHYYHYCPTFNEDKLKPWDRVEDRENKFKMTDKVKRGANNWYYSGGTISCVDSFLGKKYRKNLRTFIYRGIVFFLDRIWHTPLFEKMGVKMKYNAYYCYAATSGIWYNKGFKKRLAKRFNESLRGGGDLFGANLACMVCDHKDIDWEALRLWLDKYDEPTDKGMVNSPIQFMYLYLYYAFNK
SRS056259_LANL_scaffold_31883	SRS056259_LANL_scaffold_31883__gene_68307	F055775	MAQIAQQDNLVIEVAKSTATLDGDTKKKLIECIKGGTITDVILVTKEAEKKISHARVVSWLVDTTGNSPKYKIDIINVNSGNVEGIALN
SRS056259_LANL_scaffold_49247	SRS056259_LANL_scaffold_49247__gene_108317	F102167	MDINQIKKCLPSGWDVVDLIDHGIIDLDIMNGKMMGEYVAVLMIKSYDKTNGHILTTFSFHDKDMDKLRMLIGNAIMAVGYRNNPLNGDGNTAIK
SRS056259_LANL_scaffold_50405	SRS056259_LANL_scaffold_50405__gene_111194	F083451	MQKDQIMEEKDVLNLLMSRKDIRKLVEKSNECYSKMDFVGAMKYRKEIKDIVDRESKIMLTKSESLVSLMNNADNEYKFNMLVWLHSMMCMADVFNGILEDFKDGVRKANGNSKFVKFDNLDRLMTECKKEIDYLMKGTSKSFQISFAVRSDELREMIENMVGDNIREGYDMFKEEAKMTKETDRSKIEEFNKKLDHDQM
SRS056259_LANL_scaffold_50405	SRS056259_LANL_scaffold_50405__gene_111214	F078005	MKKSEFVKKLEKIIDMVKTEDDGFEYGGKVIFYKEDDDNCEINVKNIEMNLRVEANVMAGMDDMDFTCLMSEVYKQKAVKAIMMEKDDDEDN
SRS056259_LANL_scaffold_50657	SRS056259_LANL_scaffold_50657__gene_111777	F050794	MTEFNERLSDKIGIECTMDILLPTDDDNANIIIEYNGIIKKLMREAGKLELDTDAIENMMRDLLNELKDDVDLNILIFDVTQLLIKYNLFRLDAITEQEFKDSFVRMDSRNMEIKKLTLSDIKKVVMMMEDRYNYISSI
SRS056259_LANL_scaffold_50657	SRS056259_LANL_scaffold_50657__gene_111780	F077313	MGKYVIKRKIPKYQEAGEVGSYMLGNMDGIQGLGMEPLVNTNKGLPAQASPLGIYSMDTPDRLMDKYDTAFEKKDMNDMFPASFKGSLQRIAENYQDNAITFNNVTVNDVDKSKTGSGETDVFDFTTIPYYGADDIGSRFTQMGRGIGRMRSEGYGDLSTGVKTANVVGTVMSGIGGVLGLARNVFSGMASEQGTRTNIRLAQEREARQRRQSQMRYKDGGGVYLGPNNRFDSGSLTGEYLYPLPKSMEDQANVEVEKGEYVEQPGEAPMEAMGQKHVDGGTPVSLEEGTEVITDDTTIESDFAKYIRDTYGIKATPKDTYATLMDRYKAKIGLKSAYDDQKKALDKLKKNDKIDDENTRRLNASVLSKAINDSNETVNGLEGRFTDFANVIYKEQEDRKMKKDEDTYFAKGGEIDNIISRSMKEYGLTEDDVAEAKKELLKKVAGIRQKMEKGGSSLFDYLLTFRPVENKYNNKDNTFGYQRQGQDGSYGGINADERLEYYKTFMPLAYDAYMSAPKATAAKALQDAIYNTTGGWMGLATAENPIIANAEALRDYTTLVSFGGEDSQGNYPEDKKAAYHDRMRDNKFGQYSSSRPMIGLDVVTEDQHKALNDAGITHFSQLFSDKNKDIVNKILGEDMLKMQALRSMKGMEGLDFILDPHKVAPGPMNIGDVEDPDVKLDMPELIDASTLPKTNTNTNTGKSDNNRGGRNIVGGGLDFPEVFRMTPGPVTTEGLERHYAPTVDPVLRSADQYMVEANRAFQSQLDQMGNVPDSQRGALSSNLQAIMSSNIGRYINEVEQGNVAQRTWADNVNSQSWANTYDKNIAQRQAYQQRILQGLAINDENWARYFDSVNDEIQQKWNTATTMNTLRSIFGDVKIGPNGQLIADPQGDILSYRRLYPAQEVTKGKKG
SRS056259_LANL_scaffold_50657	SRS056259_LANL_scaffold_50657__gene_111789	F064725	MTIKGLLAEIKADLHKYDDSGAIDTSSVYRWAEIALKRFGGVIAVMSEAVVKTSNKQAVLPSDFFDMLDAYRCEPLVCEIPGGDKAKADLQHEIGWVERTERGFRWNSCTECCKEEFEKTITEKIYIGSHEVRFHYHHPVRLSIGSGLRRDCAADKYRDKYAWDNYDITISGNTMYTGFDGFIYIIYRATPKDDDGLPYIPETALGYLEDYVETYIKMKIFENAAVNGLIQGAGDAYKLYAQQEPGKFARAMKELKMSMITLNDYRELAEDNRRRMLSYERMWPNAFDKYIKLI
SRS056259_LANL_scaffold_5938	SRS056259_LANL_scaffold_5938__gene_12006	F106193	MGCNTCKEKALKAERERIERSMMNRVSSTVISDREYASKSTAGCMVMLDPLKTMERDVVSIYKQTRTIGDVGIVYLNMQKKIREWIKNLPYGCPPDEEVQEMRKEILDGRAIYIKP
SRS056259_LANL_scaffold_5938	SRS056259_LANL_scaffold_5938__gene_12011	F075481	MRLRISLRAVFCLGLLLSLSSCGSRRQVSETSIDSRLISRIETMIDEVMDRKIVEIKTSDLNADIVITEREFDTDKDVDPTTGERPVSSQTDTHIVIGRRDSTVTADSLGIDKTITGVKDIDKKTDIKHKDVDDKKESKWPIAVTSISVLLILLGLIYLLKKMKVL
SRS056259_LANL_scaffold_5938	SRS056259_LANL_scaffold_5938__gene_12014	F042095	MAKTLYKYEASSNKFVWFTTWDRALRNYYTDDYNYVPDPVVGNPYNTFVEFRSRKPGMANVDWGDGIKEQFPMTKVQGQDNYRIIFRSLAIQHMKNPNTTWWFRKEDGSQYVPVDNHAYADGRRDVQRAVSIDFTCDIYYANIQVCKMTAFPIIDIPGLEFLVVSHTMYVNDGIPVDKLSRSNKLIYIDLSNVGQRMTVIPEAITSKTEVYYLNMFNILDLRDIESSGIRNVKNMKNLQTLKLSSCYLDRYIKEFNDLPKLTLLYMAHGPSDMWNYFDINTLPFFEVDKINPNITDLFFLNDWVSGERRTGWNDDNMSGRGLEHLTSFSAINSNSLRMDKLPDYIYEMRAITRFNVNASTHSQKRSDDFVNSFYDLVVGWDQITMTSVAKDGKRNQFYSLSVSMYDTIFPTENQRPSGTEQAPEGFVKGQSNGSPATPMEKIYVLKNNYAQKWTIKPA