NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold SRS024331_LANL_scaffold_50596

Scaffold SRS024331_LANL_scaffold_50596


Overview

Basic Information
Taxon OID7000000289 Open in IMG/M
Scaffold IDSRS024331_LANL_scaffold_50596 Open in IMG/M
Source Dataset NameHuman stool microbial communities from NIH, USA - visit 2, subject 159551223
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterBaylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)22605
Total Scaffold Genes41 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)14 (34.15%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Source Dataset Sampling Location
Location NameUSA: Maryland: Natonal Institute of Health
CoordinatesLat. (o)39.0042816Long. (o)-77.1012173Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F074964Metagenome119N

Sequences

Protein IDFamilyRBSSequence
SRS024331_LANL_scaffold_50596__gene_104688F074964N/AMITKKNVNKLQNAVIKENASNLVGAVKLYNALFANGSDLRTICKALEIPAEYAVKVATLAKDKKKLVTVCSQMLPKVGDTFVKFALYSKVYKDNKVDKEKGVEARTAEWCADNVVYGCEYKPFGFSTAEALESDNSAKWLIKESDEYKATCVAVRVKSYSIRTVAKCVSEYLSHESNEQ

 ⦗Top⦘



© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.