7000000289: Human stool microbial communities from NIH, USA - visit 2, subject 159551223

Overview

Basic Information

• IMG/M Taxon OID: 7000000289
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0052812 | Ga0030561
• Sample Name: Human stool microbial communities from NIH, USA - visit 2, subject 159551223
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 151857691
• Sequencing Scaffolds: 21
• Novel Protein Genes: 21
• Associated Families: 21

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	8
All Organisms → Viruses → Predicted Viral	1
Not Available	2
All Organisms → cellular organisms → Bacteria	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → unclassified Eubacteriales → Clostridiales bacterium	6
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F039147	Metagenome	164	N
F041208	Metagenome	160	N
F042936	Metagenome	157	N
F044554	Metagenome	154	N
F051934	Metagenome	143	N
F055739	Metagenome	138	N
F057385	Metagenome	136	N
F059982	Metagenome	133	N
F067720	Metagenome	125	Y
F068856	Metagenome	124	N
F074964	Metagenome	119	N
F077319	Metagenome	117	N
F077320	Metagenome	117	N
F078003	Metagenome	117	N
F082714	Metagenome	113	N
F088914	Metagenome	109	N
F090484	Metagenome	108	N
F096287	Metagenome	105	N
F099406	Metagenome	103	N
F101191	Metagenome	102	N
F101192	Metagenome	102	N

Associated Scaffolds

Scaffold	Taxonomy	Length
C2301003	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	777
C2309319	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	833
C2334452	All Organisms → Viruses → Predicted Viral	1064
C2352914	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1343
C2369260	Not Available	1744
C2394235	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	3821
C2395227	All Organisms → cellular organisms → Bacteria	4076
C2401528	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	13064
SRS024331_LANL_scaffold_10851	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → unclassified Eubacteriales → Clostridiales bacterium	12089
SRS024331_LANL_scaffold_1574	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	6708
SRS024331_LANL_scaffold_16768	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → unclassified Eubacteriales → Clostridiales bacterium	8004
SRS024331_LANL_scaffold_3350	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → unclassified Eubacteriales → Clostridiales bacterium	16265
SRS024331_LANL_scaffold_40060	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	8674
SRS024331_LANL_scaffold_43362	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	5437
SRS024331_LANL_scaffold_46646	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → unclassified Eubacteriales → Clostridiales bacterium	9633
SRS024331_LANL_scaffold_472	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	21691
SRS024331_LANL_scaffold_48572	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	4326
SRS024331_LANL_scaffold_48785	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	5654
SRS024331_LANL_scaffold_49891	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → unclassified Eubacteriales → Clostridiales bacterium	8966
SRS024331_LANL_scaffold_50289	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → unclassified Eubacteriales → Clostridiales bacterium	7435
SRS024331_LANL_scaffold_50596	Not Available	22605

Sequences

Scaffold ID	Protein ID	Family	Sequence
C2301003	C2301003__gene_183120	F068856	VGMALAEETPDAALGDWYALNVDGTTECLTLREDGTFCYDSREGTWRKTMDGEYWLTYNSHDLPEVMERMVNSQAAEQDLTALLTETGLDVYYGSTAKGVVAHMVRDAEELQNVRTPKTDTPLEAFAGTWTMETVFAGAMEMTYTLDKGERLAFCTIDGLTMFPGAGLESFPEGTSFPLTFEDGVLRTTIPLTVQMAASSALVKEIVVDYDLTFFQTADGSLYATLRLSDVPDNPTTMFLLVPMEKE
C2309319	C2309319__gene_186148	F088914	CSGFFVFWSRKEGANYQISVKSFSNLDSYDIIQLYIMTELTDGRVSDSPFSVPYTPKENIKNPGKFIVFSAWYAAKALEMDVK
C2334452	C2334452__gene_195364	F067720	MASTTYRHLGDVTGMFAAQEQFRDITKMVCARFRGLTKTYHLGNVNKLVTFCHRFAVIGNMVRNAGQLPQPFWLGA
C2352914	C2352914__gene_202460	F078003	ALEMDAVGAVEYKSRQALMQLVGAFSEPISPAKVCYLDALGAEKEDSFLHYLQVLFCGALKVNALLFGCCDLGLFRQLQEAIHPVAQRVIVRIDHFIYAGEDEIVSNLVGIQPMVDQPCYHAYLVDAENCPQERLAHYRTGQMTFHVMHQDGSESTVALFLLGKNEFTATVMSTQDLWMSRKVLCDRERFSPIRLLWQLNDENSDFIVYTQQYCKMEHGAAIYYIRPDVPFQYIPLEVLYPVVREGFARMGMTREEYEPNVTALAEIHQARMTNMMRRRRPTYIVLNKAAMEEFVRTGRQSDHLHFLRNFTPKERKQILDVLVQQARENPFFHLYFAQEKLPYTMGEVALYDGRALITMSSGSGYDLRTDHRESCITHPFVLRAYKQFYMNTVVARLADTQTGSLNQLEELVRRCEKMIREGQKGNAGNEQEKLSGQ
C2369260	C2369260__gene_209158	F044554	FIPVLCASIARLFPCRTEIARCLTLDFAIGRYLFLSFSFSFRTNFAQALFSSLLFVSDTLAKSILFLLFENEIAHLQGQYRFNSHRYCFSAFLVL
C2394235	C2394235__gene_220803	F101192	MQTEPSDKEGRNMTYWGWLLVGIALLLTALSGTQTSLCQRMRSVPVYRGLTYWEVQQLAKAAPTSITPCGEDTIRRWVSGRYQIALRFNRYDVCLGVEEEIDG
C2395227	C2395227__gene_221382	F082714	MVVGIRFGADAPVRTVLQAVLPIFSTVDVDFLVREYWVCTFGNGLPERRFTAQEMRRAVDALTPDEHAELFTIYALPHDAPDTPPSSCEDFCARGFTMAFYAYDGDGYALLAQSEEQVEAAFEALTTAGLCEKVEEVEKETLAHWGF
C2401528	C2401528__gene_224940	F090484	FSDGSMSKIMKLQLGRNINISLRLLEQWSDDLLFMELYALYCMIKISRRDSRIRFKNQKDLLHKLGIGYSKFKNMTGHPMFDELFRMTDSTFVARRYRVNGVQLTLGCGKVNIPKNRILIKIKKNEITNHEKVLDRIREAMFVNLVRNNESVLNSGETNSQADVVDGSHSYYGLIDSTISNKTIALYLNVGLTKAKEIVGMAIQDKLVKRFENIQFITYVDNPRAYIEANEHNYPIGKLIPVYRHGAVFWQIANTWTLYKKGATNRWYFGEKDIEKGEKEKVSKKDDFNFFLKDNTHILRFLNAEEVVSEDGEILGIDRKKTKEEEARSLASVMAKEAHKDFWEGYERSTQNQIIRKYYRAIIAEDKKRRMDMFLNRLKQSYDKVSGWSKEKVATVKAGMADAEACCAEVGTSVAGVCGRVSRRMKSYNNTAPDKKAGFNEVRDMYAEFAGEMAKAVGSVSEDIYTYVKAEQFKEKIENMDISIQSLPNINTTVDNDKELDGESVFKDIPFEELSFYNDTYLYPISQYSSL
SRS024331_LANL_scaffold_10851	SRS024331_LANL_scaffold_10851__gene_16744	F039147	MRARRLLILLMMLLLLPQAQAERLTLYTRPNNVDEAMPFQLRPTELSICSVTRAMGGVVVLANDNNYDSLSLYFWQDGMTEMRKLGGGFYWVMSSDTMETAQESCEYAMSRVPNYRMPDLTHAISNLTSDGETLYALNRINGLIFKISETKDGLQTEDVCTMANLSCLNVSYRDLETDKVYTYPASLTRMYVCGSVLAISVMQENGIKVVLVDLTDGAIREIADESLEAMYEWADGELLLWRLEGSPNEISRSSGTYALSRYSVATGEETLLSTGVPYKKRSECGAYDPYSGSYYDVRTRQIVRTTDFVQEDPVVTFPAANVNIAVTKDSIVGVNLSSVYVRSKENGDMTVLRIQSSNGASNTALQHFAEENPKVILAQETLAKSAMNAASLAARMSASADAPDILRLGLTPDTPEADGSWPLDVLMDKGWCMDLSVYPEVSDYVSRLNGIYRDAVTRDGKIYALPIYAWSYGYFISRNVMEKLGLQESDIPTNLIDLCAFITKWNDNLTGAYAAYTPLEETESYRERVFDLMVRDWIGYCQAENIPLRFDHPVFREMMAALDAMRTDKIEQVNQQVNEEISDYRECLIWTDAQAVGNFANYADAFGSRIFLPMALTPDVTTHYGIGYMTVLVVNPRTTNADLVGKLLAQVIADQEATAKCVLLADYDEPIEDSYYLTMVSGYEETLTELRRQQENAPVWKKQGIQERINEEEASLQRYTVRERWTIAPKTIELYQQTILPMSYLRRPGILADSDAFNALVSQVHQGEISLEEFVEEADKLIEGLEQ
SRS024331_LANL_scaffold_1574	SRS024331_LANL_scaffold_1574__gene_1579	F059982	MTMRRMTRLLCLMLLFSLITFSCPLAEGTDAPTGTPAPTPMLTAVPESALAPFNVVLPEDAHVEMAEGRITLVRGDSRVVAMVISRVPDEDPAAALPILMQDFDPKTSETMDFDAQPGFCILGGVVNDAFGDGEDKITLMVLADSGELLILSGYNLARDHHALYLFLTELLENASMDGAAVYVKEEATETASPEV
SRS024331_LANL_scaffold_16768	SRS024331_LANL_scaffold_16768__gene_27324	F041208	MRKILAMLLSVMLLLTAAVAETSAPYAPETVLPLVANNRPYRDFARGAISSSEDAIEQAKAWLYLPLFVTNFSAKSEAVDWSAMHAEEGWYVTAYMRNTFVWLLMDEQGRVQAYDFDLLGNASLTYDGALPDNLDEAISSYIRRFADLNGFVKVADYAREEVTTFGDYAVAVTVQVTLDGTPYRFTMRLDMMAFTSVENANLHPTAAQTQRDILLLMRDNLAEKGVDVAQTFFAVQADDADGETKLTGIASFPADAASDAIREQYGELERYTLHYSGRASEAGIERVELSDWQETTATAQFPLALYALVDGKYLVPDGELAAGTAYLALDSMGLRGRNVIPLESITMLTRIRYARADGTFAESWVSSDTLTENDAAPAAPKREPIPTLESYQITLNGTAYTAFAINKVEKGYDAFADIAGTQTAVVDVLTSAAQGVIAEYGVDASDLLCRTVVEYGYRADKGCWQVDFTIPQRDMADDAYEVEVDDKDGKVTGLWGPQDGNG
SRS024331_LANL_scaffold_3350	SRS024331_LANL_scaffold_3350__gene_4368	F077319	MQENAVCAANCTVQEKRGGQKIMLIRNATLQMSATERACMDVRVMNGCVWEMGAALVKGLYESETDLCGDVLMPGRILETPVPAADEKALRLLCRRLYREGVRYFVADCPADALLRVQNRPERRGALPVTALPNPEPLRSGTGMPLTRWTAAGEFVGMMDEHSGD
SRS024331_LANL_scaffold_40060	SRS024331_LANL_scaffold_40060__gene_72978	F057385	MKKLLAVLLSIMMLAMPLTSMAENSVWDNAARQETTITIHDLNADLVAALGGDDTAMAAINDLLAALSLTGYQQGDEAGFDLNLSGKSVLGMASLTTAAEENQLMYVSSALLGGVIAVNSKDVEAIKEKALRATMKMSGQSDEEIDKAIEESKEQLSGNAEYTALMEAAANLSSMTEEQLMEELTQADTTAFMTMMNEILSGEEMAEVTEQPGDCDAAKSYVKVTVPPEKLAEMTKALLEMIHSVPSIGAYMDALFSAADTSWDDLLKELDEADLYADDIVYEYWMTEAGELVRMTASVKINNGGEEPLPMSFTATRNTADGVATWLVTIKSAEDTAATLTFAGDLENFTANLTAYAGEDTVEINVSGKGVGTDSSVVDVEIKETVDGVEQGFGVVVTTFATMDGEQGVRKVDVLVRFMGLDVVTITAETRTCDAKDALDVSKAQDLGAMTDSEFQTWFVKVMNNLQNLPMTLLMSLPESMLTLLMGGSN
SRS024331_LANL_scaffold_43362	SRS024331_LANL_scaffold_43362__gene_80989	F099406	MAEVGYNSKLEGQEVDSRLENVVQAAPGTSSESGKGGLIPAPPAGSQDGSKTLLSNMTWGDYVNKKYIDDAVSAAGWKKQIVSKLPTVEEAKDNVMYLVKDDVASTETKNVYNEYILVTEEGGTKVLESLGMVSTGVDSSYLDLSIFPSTSGTLDEDSYAKVLNAYNNNITLGKLSFYYFSLDYFLDNDNSELKIIAVLFNNTNSKEDVSGSYIDIDMVTYVVSQDKTYRAIANTATLSNDMLSYLKFMAKTPNVVTTLASLPIDAHNIIANVASATNLSMAVSAEDVGREWQVRVNNTTGTDITQPLPTSGLFQSMSGNSVVVPKNSFIELSIWYINDKLVIRVGEQA
SRS024331_LANL_scaffold_46646	SRS024331_LANL_scaffold_46646__gene_89645	F096287	MQRIQKRRAGQRQTQNALIGLLSAVSMTRVGLTQLLPLCGSAAWWLSAACMLPGLCVYGAFRLLLRRAHTRTLTDCARKLLGNFGGILIMLTLILPLLLDGAASLTALITFFTEGIGARGSQFTLTLLTASVMLIALNRDGLPRGVYLLRHVLLVAATIIAINALLDAHPDGIVPLLGEGVPPLLSGIRSAWGMSWMLLLLLEFPAEEGARRTPAMLAGLLPCPVILLLLSLSIPPELTVPGRSLASRLALPTLFLQPAVRTLAQCLLMMTLFLSIAGSAQLAARFLTSSCQKPKKWVPYALIGLLTLTQLFDISRLWRVLTALTAWSLVPGVLLLLVLTIARLCRREKA
SRS024331_LANL_scaffold_472	SRS024331_LANL_scaffold_472__gene_741	F077320	MKRKGMHRRRKLVLLAVLLIMVGIAVWRIWQTPRPTVLHRQDAWLSSAEPEMVDTLPDNAFTAELPEEIDGRLLYIRDYSASGHYQIVWKNVSAEAAESYLTALLDKGFTRLMGTAEDIASGVLLARGDLTLSISLSGGTLNMLMTRAEEPTPTPLP
SRS024331_LANL_scaffold_48572	SRS024331_LANL_scaffold_48572__gene_95825	F042936	MGRGGGKGRVWKTKEGIMKTSGIVDRGEDTIRNFEKVEQEGALTPPYLGKVYFRLQLRGK
SRS024331_LANL_scaffold_48785	SRS024331_LANL_scaffold_48785__gene_96560	F101191	LLISHHPASAECLQLGEGMLLCGFDLDKALSSRDPLDCMAEAVADDTKRIGTTCGGGIFRVVPREFDPESGSHRLPFAGSIRLIDWRVTLSGTMLDVTPENLARLLPSDTEMTERVTTLTPKQARKPLSRLCWIGTTSRGLLLIELRNPLCISGASLTSVPDGAGRLPFTFLAQNDRPGDVNLPARLYWWKEETHDAA
SRS024331_LANL_scaffold_49891	SRS024331_LANL_scaffold_49891__gene_101059	F051934	MGLMRRLAAAALAAVLLLSTALGERVTFRLSADIDPVQYPAQERKLAQGLKSLFRLLTVEGDVVVSDGSFDARIDLGLTNAPEKTATRIRFFGLDSHWGIQATDLGGETLMVNQLAWLEFAIKAYNHLDLPLQRVFLWLSPYAHTSAWAGLRQEIADLAAQETSGRLENTALITCAEEIARLSEDDRALYYYIEAFGLESGTDANIFDALATLPEYVEANFPDGLSIEHTENGVSWQNGEKTVFSYADADGTQVVSLHLPDLVDFSATLRRDALLFTGALSLQSDVLNADVSFSLPASYPVTLPFYAQIDADGMMTGDDGIHLAFEGEAQGDTITIRRIQPDHSATMMTLTVKVIQVAEGTVKYAPEDVQGTNVLSVDGPALAELMGRIGKPMVRKVTQWLAALPAELVQGAMDAMEDSGLLGTLTDAILNGEAGEY
SRS024331_LANL_scaffold_50289	SRS024331_LANL_scaffold_50289__gene_102833	F055739	MTEQQLREKLQFAYGNMPDATRAAFEHSLTHHRAPETHRNIGLSRMMRIVITAVLMALMLTAVGVAAARFFSVTDVHPAQDGTEGDYQAHYLALEERYDSDLLSVSVNDAVYDGSVLAFTMEMAAKTDDVLAVEVRICGECDGKMYRFDPLDVYGGEFQSLLMLPDLGGTFDGEKYAAEGILFDENGQMPLEGKPIAWTIEIDVLKAVWQTETMPDDLYEALSEEDDVAQYIREQAARHIITLTDAGVEDYLLEMCGAGWDEIEQISKADLLLRCGGFERAETYTVAFATEGNTQYVHPELAGLRIPLDGYTAVVDYVRASFLGGCVVLHCEAPNGTALPNGTALPDVWRIYRNDEQNPAGEAGWVRASGYAGVPGGVVDVNQPSICLYFAPCADLTSLRIVPEGEAGFTLNLSGEKGTE
SRS024331_LANL_scaffold_50596	SRS024331_LANL_scaffold_50596__gene_104688	F074964	MITKKNVNKLQNAVIKENASNLVGAVKLYNALFANGSDLRTICKALEIPAEYAVKVATLAKDKKKLVTVCSQMLPKVGDTFVKFALYSKVYKDNKVDKEKGVEARTAEWCADNVVYGCEYKPFGFSTAEALESDNSAKWLIKESDEYKATCVAVRVKSYSIRTVAKCVSEYLSHESNEQ