Scaffold SRS053398_LANL_scaffold_38039

Overview

Basic Information

• Taxon OID: 7000000188
• Scaffold ID: SRS053398_LANL_scaffold_38039
• Source Dataset Name: Human stool microbial communities from NIH, USA - visit 1, subject 675950834
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3792
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (16.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Source Dataset Sampling Location

• Location Name: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173

Associated Families

Family	Category	Number of Sequences	3D Structure?
F042095	Metagenome	159	N
F089590	Metagenome	109	N

Sequences

Protein ID	Family	RBS	Sequence
SRS053398_LANL_scaffold_38039__gene_83920	F042095	N/A	MAKTLYKYEASSNKFVWFTTWDRALRNYYTDDYNYVPDPVIGNPFNTYVQFRSRKPGMANVDWGDGIKEQFPMTKVQGQNDYRIIFRSLAIQYRKNPNTTWWFRKEDGSQYIPVDNHLYADGRSDVQRSVAIDFTCDIYYAEIMTCKMTAFPIVDTPGLESLIVHNTTYANDGIPVDKLSRSKKLTYISLEDVGTRMTVMPEAMTSKTEVYYLNMFNMLDLRNIESSGIRNIKNMKNLQTLNLSSCYLDRYIKEFNDLPKLTSLNITSGPPDMWNYFDINTLPSFEVDKINPNITGFVFLDDWMNGERRTGWNDDNMSGRGLDHLTGFTANHSNSLRMDKLPDYIYEMRAITRFNVNASTHSQKRSDDFVNSFYDLVVGWDQITMTSVAKDGKRNQFYSLSVSMYNAIFPTENQRPSGTEQAPEGFVKGQSNGSPATPMEKIYVLKNNYAQRWTIKPA
SRS053398_LANL_scaffold_38039__gene_83922	F089590	GAG	MKDKDMIERVGALWNIALAYGASCWAYFQPVHHLLTVLLIVLIANFLARLAQSVRGWKLRRSRRRRFSFKRWLREVRFTDILKEFALSCFIVMTLCVIYKTLYPIEEEASMILTVTKYGVYIALVGYVMLFLNTIGDAFSDAYLVKVFKAVFKRINVFKMFSFSKNIPDETFDDIKKIADDEVKDKS