7000000188: Human stool microbial communities from NIH, USA - visit 1, subject 675950834

Overview

Basic Information

• IMG/M Taxon OID: 7000000188
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0052693 | Ga0030582
• Sample Name: Human stool microbial communities from NIH, USA - visit 1, subject 675950834
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 135217171
• Sequencing Scaffolds: 11
• Novel Protein Genes: 14
• Associated Families: 14

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	5
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium	3
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Rikenellaceae → Alistipes	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F042095	Metagenome	159	N
F050794	Metagenome	145	N
F057001	Metagenome	137	Y
F058555	Metagenome	135	N
F064725	Metagenome	128	N
F078005	Metagenome	117	N
F078006	Metagenome	117	N
F080673	Metagenome	115	N
F085718	Metagenome	111	N
F089590	Metagenome	109	N
F089592	Metagenome	109	N
F090514	Metagenome	108	N
F093883	Metagenome	106	N
F105374	Metagenome	100	N

Associated Scaffolds

Scaffold	Taxonomy	Length
C2297004	Not Available	1102
C2330611	Not Available	2275
SRS053398_LANL_scaffold_19215	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium	20623
SRS053398_LANL_scaffold_23181	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium	1180
SRS053398_LANL_scaffold_26807	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	1486
SRS053398_LANL_scaffold_29985	Not Available	10503
SRS053398_LANL_scaffold_3068	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Rikenellaceae → Alistipes	2161
SRS053398_LANL_scaffold_31781	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium	6178
SRS053398_LANL_scaffold_36322	Not Available	9453
SRS053398_LANL_scaffold_38039	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	3792
SRS053398_LANL_scaffold_40957	Not Available	4276

Sequences

Scaffold ID	Protein ID	Family	Sequence
C2297004	C2297004__gene_185630	F058555	IQAKKDELGCLRLPAGSLVCPVDYKPVTNKDGKKVTAVKYSNKKDNIRGSGMVIEKKCKQVVAYLTIVNVQKHVFLRNRMREGYRDRIEINTDDFIDILSDGIAYFCYRHVIEDCHEDIDYQLKTLKAYAEGEIRIALSDIMIYSYKAKKNEDTKDIFVGKKTSVYKCMNKNLSSDERRNMANKSRKLDRVRILSKIIFRARTRNVHHIYKVTKRKTVKFNVAYLLNELNKKLAGIGMREISQSTIYRYISMFLDMCKKSISDLYEEVVKNNGVVNTKDNNNVTIGHIRASYKGSVLYILISTDYIINVFLGKKSAEMSKAG
C2330611	C2330611__gene_193944	F093883	MEDKDIKTEIRDYLKEEADTHIRHWIAIKRESKRLYSDIEDRTKKIALKSSSLIKEEDFVVLHEMTHKIQMLNIEAVKVNSRLMFIIQLATSFGMDLDLDTTYASTAKSIIEDRTSGFVFYDDKERLRYADKELEDMFHDMSVTEVSKIGVVQSYELLMKQYNEFKELKENATGKTKADE
SRS053398_LANL_scaffold_19215	SRS053398_LANL_scaffold_19215__gene_40950	F078005	MKKSKFVKELERIIDMVKAEDDGFEYGGKVIFYKEDDDNYEISVKNIEMNLMVEANTMASMDDRTFACLMSEVYKQKFTKAIMMSEDEDDEDN
SRS053398_LANL_scaffold_23181	SRS053398_LANL_scaffold_23181__gene_49782	F057001	QNEVKKTSEKTLTGAVKAWCQLFKSGKEINEILKDNDIKVDKAIVSALVNLAKDKEIVIQLCKEILPRVNNTFCSYKEVEREYYDKNDKDKNKKLKMNEIEDVAILGSFHKRFGYNEPIEFDFGIYYETFNDADKRIVKCAVPIKRYTFSLIAKCITYYLTHPKNDR
SRS053398_LANL_scaffold_26807	SRS053398_LANL_scaffold_26807__gene_58028	F090514	WSSRMNLRIHALKKASRQRPGVKIAAARFFSILYYPFCAKRSSFFQQNVQPRGNFFANRPIFVYFADVLPRLTGANWFVILLTIVPAGSRTRAGSSLPLIPASNIFLKQTPRRGLPLAWNAGAVPFLFCG
SRS053398_LANL_scaffold_29985	SRS053398_LANL_scaffold_29985__gene_65472	F089592	MKEILKSRKVLAEVNGFNIMSDTLYEVVGKHDGSAPQAFQDANIAKAPFPENATHVCCPWDDFSKAYNTGFYPRSRCYNGLDKNEIDKLVKQRVDNIMKPFEEMSQMDLSQTNLEFWDDAKDKIFMGKVYNTANTVDLFYLYLAVFSGMLTPQEMDGDPVFMNSMFCFVEKDNMKDFVQQREINKMNISYKFISALKKGGDDRQAVIDLLLYIGIVTRPDFTEDEYYTGSLSNWMNEKKTNVDYLLDIWDRSLEGDFKEVLEFYRIVNVLQRNGRINMTPSGLQYNGQIIGPDVRTSAEFLATKKDFINIKANVLDEYEEIMSMSNIDDKSKTKKVKDIKKKDDVEEGDKAKEE
SRS053398_LANL_scaffold_3068	SRS053398_LANL_scaffold_3068__gene_5479	F105374	LRPGFGAAENIRYLVLSKGVFAMKKRVALLVALCIWKVVAAQTPYGEMPERFRPDTLPCRLGGGVCFGMDGLDAAIPRGEGASSCRDPRVVFVAGDTLITFISVAGVADTALGDPVCRFYGRNVARVVSRTRRMTGGRMGAADNDFPDDPDFAELQGVVIENQRYPWESYAAGDSAYRLPVARSLVGGKEDPLLGSDMRRRYVRLLTEVSVELKAGGTRPFVHVVYLLPDP
SRS053398_LANL_scaffold_31781	SRS053398_LANL_scaffold_31781__gene_69344	F085718	MVIEFDFEIYKNGDYDKVYLRNGKEARVLCDNGKGDRPIVVMVENDNADDYIILRYNETGRRNINSQSSLDLMLSVKEREPELWVVVISYMDNKDKRQKMVLPNFFSRNIRGNIYLQGSSKSNVSYYVGRLEEDGCFDELCEKIRVKRDRIYNMEIISLSDDKATV
SRS053398_LANL_scaffold_31781	SRS053398_LANL_scaffold_31781__gene_69345	F078006	MGDNILRKAADELKKAGCRVFAWQDDTYNRGWSKGDYTMLYYAFPDSPNIGYLSHGEYGMSVAYSRAYIPSCGSGSGCCVKEEATFDLEAALDVLNGPLPRWCRSYGVYPKQYDNIDKWYNSDNHNKKLFKEI
SRS053398_LANL_scaffold_31781	SRS053398_LANL_scaffold_31781__gene_69351	F080673	MNMNEIELLRLQDEALSYLRDNITKDEAYYVLTTDKDMIEILIADKKDGSKRIKILDMEYTIEKDDMLLLFDTDGIIDECLLAASYIGVNMYFRRQDVNAILNNINREKVMKYPYIAIQLDNIQTIEKRRVIFEITGHRIDDNKEKIDFMFVYFMARIL
SRS053398_LANL_scaffold_36322	SRS053398_LANL_scaffold_36322__gene_79743	F050794	MLYTSNYFVDVRQRQLLDHTYALSRDQAFDYMTEFNKRLSDKVGIKCTMDILLPTDDDNANIIIEHNGIIKKLMREAEKLELDTDAIKAMMRDLLNELKDDIDLNILIFDVSQLLIKYNLFRLEAITEQEFKGSFVRMDSRNMEIKKLTLSDIKKVVMMMEDRYDYALYMTEEYN
SRS053398_LANL_scaffold_38039	SRS053398_LANL_scaffold_38039__gene_83920	F042095	MAKTLYKYEASSNKFVWFTTWDRALRNYYTDDYNYVPDPVIGNPFNTYVQFRSRKPGMANVDWGDGIKEQFPMTKVQGQNDYRIIFRSLAIQYRKNPNTTWWFRKEDGSQYIPVDNHLYADGRSDVQRSVAIDFTCDIYYAEIMTCKMTAFPIVDTPGLESLIVHNTTYANDGIPVDKLSRSKKLTYISLEDVGTRMTVMPEAMTSKTEVYYLNMFNMLDLRNIESSGIRNIKNMKNLQTLNLSSCYLDRYIKEFNDLPKLTSLNITSGPPDMWNYFDINTLPSFEVDKINPNITGFVFLDDWMNGERRTGWNDDNMSGRGLDHLTGFTANHSNSLRMDKLPDYIYEMRAITRFNVNASTHSQKRSDDFVNSFYDLVVGWDQITMTSVAKDGKRNQFYSLSVSMYNAIFPTENQRPSGTEQAPEGFVKGQSNGSPATPMEKIYVLKNNYAQRWTIKPA
SRS053398_LANL_scaffold_38039	SRS053398_LANL_scaffold_38039__gene_83922	F089590	MKDKDMIERVGALWNIALAYGASCWAYFQPVHHLLTVLLIVLIANFLARLAQSVRGWKLRRSRRRRFSFKRWLREVRFTDILKEFALSCFIVMTLCVIYKTLYPIEEEASMILTVTKYGVYIALVGYVMLFLNTIGDAFSDAYLVKVFKAVFKRINVFKMFSFSKNIPDETFDDIKKIADDEVKDKS
SRS053398_LANL_scaffold_40957	SRS053398_LANL_scaffold_40957__gene_91157	F064725	MTIKGLLAEIKADLHKYDDSGAIDTSSVYRWAEIALKRFGGVIAVMSEAVVKTNNKQAVLPSDFFDMLDAYRCEPLICEIPGGDKAKADLQHEIGWVERTERGFRWNSCTECCKEEFEKTITERIYIGSHEVRFHYHHPVRLSIGRGLRRDCAADKYRDKYDWDNYDITISGNTMYTGFDGFIYIIYRATPKDDDGLPYIPETALGYLEDYVETYIKMKIFENAAVNGLIQGAGDAYKLYAQQEPGKFARAMKELKMSMITLNDYRELAEDNRRRMLSHERMWPNAFDKYIKLI