Scaffold SRS015378_WUGC_scaffold_24186

Overview

Basic Information

• Taxon OID: 7000000168
• Scaffold ID: SRS015378_WUGC_scaffold_24186
• Source Dataset Name: Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 764042746
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 43820
• Total Scaffold Genes: 54
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 48 (88.89%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Associated Families: 7

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Human → Digestive System → Oral Cavity → Supragingival Plaque → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Source Dataset Sampling Location

• Location Name: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018385	Metagenome	235	Y
F027205	Metagenome	195	N
F036281	Metagenome	170	N
F043991	Metagenome	155	N
F051214	Metagenome	144	N
F074985	Metagenome	119	N
F081456	Metagenome	114	N

Sequences

Protein ID	Family	RBS	Sequence
SRS015378_WUGC_scaffold_24186__gene_29658	F074985	AGGAGG	MELTDGGWYKTPRIIKGEDFLAHIHDTYASGNAMYVEFKASEGEVRILEYRQLYGVDTENAVLFTINTYPQESIILKNIEEYEFIQYRPQQAWKAIHMGSTKRFNLEQFDQLWLDQTFQKLHPIIVNHDGKFWHVMGLKLDVDADGSFWGLYLKRQDSDFMKEIRMPLTQKFIYNPISGSWSLDDPTQEIKDLEEIKQALRADAILDVTVSGVPMRLIRVQEIAKGVLFFVFQDEEKNKRYYYNRPAIKLRIVTDSETGEQKYLLDHIKAMHID
SRS015378_WUGC_scaffold_24186__gene_29659	F036281	AGGAG	MITLIKVDEGPVDIYELRMQYLAKLKQTDGVMLPTFIYRNKDLFVTEFKPTCDDQWIMYMTNAEGLITKMRIKNGDLMSNGSVLFLAEEQKTYNAKEYYDYWTAREGKPAPFFYESRQYHVKSFMRVPGSTDLWITAERETGHWYTFRMSDDQKSKFTRHTMTNEKGHQSYDWVLENVEWAADTIRYF
SRS015378_WUGC_scaffold_24186__gene_29660	F027205	AGGA	VASRLIVSADDILKAVKESEEFEKKALSEARKRDRAEGKEPRETLYPNPDLKPGREIVLDYIKNPERRRTPRCSVHLEKRTANNSYRFIVDVSQIRNRELADEIEKDLFAFMDYLLDEYDIPRRIKRSAK
SRS015378_WUGC_scaffold_24186__gene_29663	F043991	GAG	MSKKNPSVIDYFDLNGDLNEEAHEFEEVKLEDYIDKRSNVKPSWIGKYSHQMHFDLPDDTEVSFYKGLNIVYADINFAGGIRTILFKCRQKKNLTRFISRVLEIAQRDPSNVHPDFRA
SRS015378_WUGC_scaffold_24186__gene_29664	F051214	AGGAG	MPGKIVAHDTHLRIDTEFIELKDCFEAFRRGVEYREKNDVDDILVICNTPDIIEYQLKNGDSFIITYDTIHRIIVMRVFLHDEDITIKPIYIYNNREYQIACEFLRQVMHDKIDLKDEWI
SRS015378_WUGC_scaffold_24186__gene_29666	F018385	GGA	MAEYENQWGPYKEHSIEKDRDPVLDDPIIYGVNVKHFTVTVYSQDGRVNKYWNARILKDDLGYCRIACPRDGKILCFNWVHWTAYMFTHDGLNELVFMPGSSRKTISRLWCEEVK
SRS015378_WUGC_scaffold_24186__gene_29677	F081456	N/A	LGYRLFLEKGAHMFEEQPIYYILISLIFLIVFGAISFATWLVWLTNVAFFAKLVVTAIGFLLCAMTVILYTISAE