7000000168: Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 764042746

Overview

Basic Information

• IMG/M Taxon OID: 7000000168
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0052669 | Ga0031021
• Sample Name: Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 764042746
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 33826980
• Sequencing Scaffolds: 1
• Novel Protein Genes: 7
• Associated Families: 7

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Oral Cavity → Supragingival Plaque → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018385	Metagenome	235	Y
F027205	Metagenome	195	N
F036281	Metagenome	170	N
F043991	Metagenome	155	N
F051214	Metagenome	144	N
F074985	Metagenome	119	N
F081456	Metagenome	114	N

Associated Scaffolds

Scaffold	Taxonomy	Length
SRS015378_WUGC_scaffold_24186	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	43820

Sequences

Scaffold ID	Protein ID	Family	Sequence
SRS015378_WUGC_scaffold_24186	SRS015378_WUGC_scaffold_24186__gene_29658	F074985	MELTDGGWYKTPRIIKGEDFLAHIHDTYASGNAMYVEFKASEGEVRILEYRQLYGVDTENAVLFTINTYPQESIILKNIEEYEFIQYRPQQAWKAIHMGSTKRFNLEQFDQLWLDQTFQKLHPIIVNHDGKFWHVMGLKLDVDADGSFWGLYLKRQDSDFMKEIRMPLTQKFIYNPISGSWSLDDPTQEIKDLEEIKQALRADAILDVTVSGVPMRLIRVQEIAKGVLFFVFQDEEKNKRYYYNRPAIKLRIVTDSETGEQKYLLDHIKAMHID
SRS015378_WUGC_scaffold_24186	SRS015378_WUGC_scaffold_24186__gene_29659	F036281	MITLIKVDEGPVDIYELRMQYLAKLKQTDGVMLPTFIYRNKDLFVTEFKPTCDDQWIMYMTNAEGLITKMRIKNGDLMSNGSVLFLAEEQKTYNAKEYYDYWTAREGKPAPFFYESRQYHVKSFMRVPGSTDLWITAERETGHWYTFRMSDDQKSKFTRHTMTNEKGHQSYDWVLENVEWAADTIRYF
SRS015378_WUGC_scaffold_24186	SRS015378_WUGC_scaffold_24186__gene_29660	F027205	VASRLIVSADDILKAVKESEEFEKKALSEARKRDRAEGKEPRETLYPNPDLKPGREIVLDYIKNPERRRTPRCSVHLEKRTANNSYRFIVDVSQIRNRELADEIEKDLFAFMDYLLDEYDIPRRIKRSAK
SRS015378_WUGC_scaffold_24186	SRS015378_WUGC_scaffold_24186__gene_29663	F043991	MSKKNPSVIDYFDLNGDLNEEAHEFEEVKLEDYIDKRSNVKPSWIGKYSHQMHFDLPDDTEVSFYKGLNIVYADINFAGGIRTILFKCRQKKNLTRFISRVLEIAQRDPSNVHPDFRA
SRS015378_WUGC_scaffold_24186	SRS015378_WUGC_scaffold_24186__gene_29664	F051214	MPGKIVAHDTHLRIDTEFIELKDCFEAFRRGVEYREKNDVDDILVICNTPDIIEYQLKNGDSFIITYDTIHRIIVMRVFLHDEDITIKPIYIYNNREYQIACEFLRQVMHDKIDLKDEWI
SRS015378_WUGC_scaffold_24186	SRS015378_WUGC_scaffold_24186__gene_29666	F018385	MAEYENQWGPYKEHSIEKDRDPVLDDPIIYGVNVKHFTVTVYSQDGRVNKYWNARILKDDLGYCRIACPRDGKILCFNWVHWTAYMFTHDGLNELVFMPGSSRKTISRLWCEEVK
SRS015378_WUGC_scaffold_24186	SRS015378_WUGC_scaffold_24186__gene_29677	F081456	LGYRLFLEKGAHMFEEQPIYYILISLIFLIVFGAISFATWLVWLTNVAFFAKLVVTAIGFLLCAMTVILYTISAE