Scaffold SRS012285_Baylor_scaffold_62129

Overview

Basic Information

• Taxon OID: 7000000132
• Scaffold ID: SRS012285_Baylor_scaffold_62129
• Source Dataset Name: Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 158337416
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 43433
• Total Scaffold Genes: 58
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 50 (86.21%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Human → Digestive System → Oral Cavity → Supragingival Plaque → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Source Dataset Sampling Location

• Location Name: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173

Associated Families

Family	Category	Number of Sequences	3D Structure?
F049707	Metagenome	146	N
F095632	Metagenome	105	N

Sequences

Protein ID	Family	RBS	Sequence
SRS012285_Baylor_scaffold_62129__gene_82884	F095632	N/A	MTMSFKETTGYKVVSLVASTSASITAGAVVGALCPPAGVVLTAIYGIGSSVLGTYVGDKAGRQYAETLAETIDSMKTPSTN
SRS012285_Baylor_scaffold_62129__gene_82905	F049707	AGGAG	VVSEYRSPHNDGHDPYILIWEYGNDIRRAEFTERWAEYDETGWAVWYFRLVDGGIMTFSAREWEQKDDVNHLTTIWMKPSLYDIERKKN