NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold SRS012285_Baylor_scaffold_62129

Scaffold SRS012285_Baylor_scaffold_62129


Overview

Basic Information
Taxon OID7000000132 Open in IMG/M
Scaffold IDSRS012285_Baylor_scaffold_62129 Open in IMG/M
Source Dataset NameHuman supragingival plaque microbial communities from NIH, USA - visit 1, subject 158337416
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterBaylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)43433
Total Scaffold Genes58 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)50 (86.21%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Human → Digestive System → Oral Cavity → Supragingival Plaque → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Source Dataset Sampling Location
Location NameUSA: Maryland: Natonal Institute of Health
CoordinatesLat. (o)39.0042816Long. (o)-77.1012173Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F049707Metagenome146N
F095632Metagenome105N

Sequences

Protein IDFamilyRBSSequence
SRS012285_Baylor_scaffold_62129__gene_82884F095632N/AMTMSFKETTGYKVVSLVASTSASITAGAVVGALCPPAGVVLTAIYGIGSSVLGTYVGDKAGRQYAETLAETIDSMKTPSTN
SRS012285_Baylor_scaffold_62129__gene_82905F049707AGGAGVVSEYRSPHNDGHDPYILIWEYGNDIRRAEFTERWAEYDETGWAVWYFRLVDGGIMTFSAREWEQKDDVNHLTTIWMKPSLYDIERKKN

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