Scaffold SRS043411_WUGC_scaffold_15144

Overview

Basic Information

• Taxon OID: 7000000040
• Scaffold ID: SRS043411_WUGC_scaffold_15144
• Source Dataset Name: Human stool microbial communities from NIH, USA - visit 2 of subject 763759525
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 51622
• Total Scaffold Genes: 79
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 34 (43.04%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Source Dataset Sampling Location

• Location Name: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173

Associated Families

Family	Category	Number of Sequences	3D Structure?
F050794	Metagenome	145	N
F076653	Metagenome	118	N
F078005	Metagenome	117	N
F083451	Metagenome	113	N
F098313	Metagenome	104	N

Sequences

Protein ID	Family	RBS	Sequence
SRS043411_WUGC_scaffold_15144__gene_27220	F050794	AGG	MMLYTSNYFVKVRQKQLLDHTYSLSRDQAFDYMTEFNERLSDKIGIECTMDILLPTDDDNANIIIEYNGIIKKLMREAEKLELDTDAIKDMMRDLLNELKDDVDLNILIFDVTQLLIKYNLFRLDAITEQEFKDSFVRMDSRNMEIKKLTLSDIKKVVEMIETRYNRFVW
SRS043411_WUGC_scaffold_15144__gene_27231	F098313	AGG	MREKKFDFVIYPLDLIITVGLDYKTLCDRFENMEPEHNGEWGNKEDMDKEASFVNLVKDRDDDGRFAILWDFSSDDDITIKNTCHESFHVAMSVCQFCNMSLGFKVGEDEHAAYIAGFAGGCAYDFLYSNSTE
SRS043411_WUGC_scaffold_15144__gene_27268	F076653	AGG	MTLSDKYFGWKDIFFDRFVHCCNEKSGQPQGSNIPLAKINFDNKTGYVEDGTINIAELLQYLWINNKVYRCEYAPIDISSALQTLIRLTENAKHMFEDQPGVYDMIPYRGFFLRDDFSSGKDYSLDLDKIVSGMGGWYGEDEDPCYSMFVSQDQIWNLNPILKVLADEGSILAKELGYDMNSYVSDNGYTIYNPYLSWINHYYHYCPTFNEDKLKPWDRVEDRKNKFKMTDKVKRGANNWYYSGGTISCVDSFLGKKYRKNLRTFIYRGIVFFLDRIWHTPLFEKMGVKMKYNAYYCYAATSGIWYNKGFKKRLAKRFNESLRGGGDLFGANLACMVCDHKDIDWEALRLWLDKYDEPNDKGMVNSPIQFMYLYLYYYFNK
SRS043411_WUGC_scaffold_15144__gene_27276	F083451	GAG	MYKSEKEKQILDLLMSRKDIRKLVEKSNECYSKMDFVGAMRYRQEIKDIVDRESKIMLTKSESLIGLMNNADNEYKFNILVWLHSMMCMADVFSGILEDFKDGVRKANGNSKFVKFDNLDRLMAECKKEIDYLMKGTSKSFQISFAVRSDELREMIENMVGDNIREGYDMFKEEAKMTKETDRSKIEEFNKKLDHDQM
SRS043411_WUGC_scaffold_15144__gene_27295	F078005	N/A	MEKSEFVKKLEKIIDMVKTEDDGFEYGGKVIFYKEDDSNYEVSVMNIEMNLEVEANVMAGMDDMDFTCLMSEVYKQKAVKAIMMEEDDDEDN