NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold SRS043411_WUGC_scaffold_10552

Scaffold SRS043411_WUGC_scaffold_10552


Overview

Basic Information
Taxon OID7000000040 Open in IMG/M
Scaffold IDSRS043411_WUGC_scaffold_10552 Open in IMG/M
Source Dataset NameHuman stool microbial communities from NIH, USA - visit 2 of subject 763759525
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterBaylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)23678
Total Scaffold Genes19 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (31.58%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Source Dataset Sampling Location
Location NameUSA: Maryland: Natonal Institute of Health
CoordinatesLat. (o)39.0042816Long. (o)-77.1012173Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F042095Metagenome159N
F075481Metagenome119N

Sequences

Protein IDFamilyRBSSequence
SRS043411_WUGC_scaffold_10552__gene_18661F075481AGAAGMIRLRISLKAVFCLGLSLFLSSCGSRRQVSDTSIDNRLISRIETMIDEVMDRKIVEIRTSDLNADIVITERKFDTTKEVDPSTGERPVSSQTDAHIVIGRRDSTVTVDSLGIDKAITGVKDIDKKTDIEHKDVDDKKEPRWPIAITSISVLLILLVLIYLLKKMKVL
SRS043411_WUGC_scaffold_10552__gene_18665F042095N/AMAKTLYKYEASSNKFVWFTTWDRALRNYYTDDYNYVPDPVVGNPYNTFVEFRSRKPGMANVDWGDGIKEQFPMTKVQGKDNYRIIFRSLAIQHRKNPNTTWWFRKEDGSQYVPVDNHAYADGRRDVQRAVSIDFTCDIYYANIQVCKMTSFPIVDMPGLEFLVVSHTLYVYDGIPVDRLSRSKKLIYIDLQNMGQRMTVIPEAIISKTEVYYLNMFNMLDLRDIESSGIRNIKNMKNLQTLNLSSCYLDRYIKEFNDLPKLTSLNITHGPSDMWNYFDINTLPFFEVDKINPNITDFAFLNDWMNGERRTGWNDDNMSGRGLDHLTGFTVNHSNSLRMDKLPDYIYEMRAITGFGVRASTHSQKRSDDFVDSFYKLVTEWDQITMTSVANDGKRNQFYGLSVSMYDAIYPTENQRPSGTEQAPEGFVKGSSNGSPATPMEKIYVLKNNYAQRWTIKPE

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