Scaffold SRS019333_WUGC_scaffold_12174

Overview

Basic Information

• Taxon OID: 7000000033
• Scaffold ID: SRS019333_WUGC_scaffold_12174
• Source Dataset Name: Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 765337473
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 11945
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 16 (84.21%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Associated Families: 6

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Human → Digestive System → Oral Cavity → Supragingival Plaque → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Source Dataset Sampling Location

• Location Name: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018385	Metagenome	235	Y
F027205	Metagenome	195	N
F036281	Metagenome	170	N
F067847	Metagenome	125	N
F071329	Metagenome	122	N
F074985	Metagenome	119	N

Sequences

Protein ID	Family	RBS	Sequence
SRS019333_WUGC_scaffold_12174__gene_11714	F074985	AGGAGG	MELTDGGWYKTPRIIKGKDFLAHIHDTYASGNAIYVEFKVSEGEVRILEYQRLYEVDTESAVLFTINTYPQESILLKNIEEYEFIQYRPQKAWKAIHMGSTKRFNLEQFDQLWLDQTFQKLHPVIVNHDGNFWHVMGLKLDVDADGSFWGLYLKRQDSDFMKEIRMPLTQKFLYNPISGSWSLDDPTQEIKDLEEIKQTLRADAILDVTVSGVPMKLIRVQEIAKGVLFFVFQDEEKNKRYYYNRPAIKLRIVTDSKTGEQKYLLDHIKAMHID
SRS019333_WUGC_scaffold_12174__gene_11715	F036281	AGGAG	MITLIKVDEGPVDIYELRMQYLAKLKQTDGVMLPTFIYRNKDLFITEFKPTCDDQWIMYMTNAEGLITKMRIKNGDLISNGSVLFLAEERKTYNAKEYYDYWSAREGKPAPFFYESRQYHVKSFMRVPGSTDLWITAERETGHWYTFHMSDDQKSKFTRHTMTNEKGHQSYDWVLENVEWAADTIRYF
SRS019333_WUGC_scaffold_12174__gene_11716	F027205	AGGA	VASRLIVSADDILKAVKESEAFERKALSEARKRDRAEGKEPRETLYPNADLKPGREIVLDYIKNPERRRTPRCSVHLEKRTANNSYRFIVDVSQVRNRELADEIEKDLFAFMDYLLDEYDIPRRIKRSAK
SRS019333_WUGC_scaffold_12174__gene_11721	F071329	AGGA	MLPVAKIIISGLTSIGAGMIASKLTKPIVSNANGIAKILLWFGSVGTGVAASAIVAREVELQFDATVKAVQEARDHVEIED
SRS019333_WUGC_scaffold_12174__gene_11722	F018385	GGA	MMAEYENQWGPYKEHSIEKDRDPVLDDPIIYGVNTKHFTVTVYSQDGRVNKYWNARILKDDLGYCRIACPRDGKILCFNWVHWTAYMFTHDGLNELVFMPGSSRKTISRLHHEEVK
SRS019333_WUGC_scaffold_12174__gene_11729	F067847	N/A	PTTKKLYFHMSRREMFDFIKRYDNVTNFEKWLQAAIDNEDLYTMMKFFDDLIGTSYGERQGERFVKSEQIKESFLNSPEYEELFDQLMDNPALVREFYNGILPEKIMKQVQQDPKYKELDDKLKETELNNL