NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold SRS022725_LANL_scaffold_63602

Scaffold SRS022725_LANL_scaffold_63602


Overview

Basic Information
Taxon OID7000000018 Open in IMG/M
Scaffold IDSRS022725_LANL_scaffold_63602 Open in IMG/M
Source Dataset NameHuman supragingival plaque microbial communities from NIH, USA - visit 1, subject 370425937
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterBaylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5216
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (12.50%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Capnocytophaga → Capnocytophaga gingivalis(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Human → Digestive System → Oral Cavity → Supragingival Plaque → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Source Dataset Sampling Location
Location NameUSA: Maryland: Natonal Institute of Health
CoordinatesLat. (o)39.0042816Long. (o)-77.1012173Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F054111Metagenome140N

Sequences

Protein IDFamilyRBSSequence
SRS022725_LANL_scaffold_63602__gene_146368F054111N/AMNKSLESITHKEFLKLMERLKNLQEFTFLEYIMAPEADIFYFNFMEKTVKIKWDLDYGLFLEIESLSTADRDLFLNILDKEILFLI
SRS022725_LANL_scaffold_63602__gene_146370F054111N/AMVFKNLEKESMNKPLDNITHETFLKLMKHLKNLQEFTFLEYIIAPEADIFYFNFMEKIVKIKWDLDYGLSLETKSLSTSDKDLFLNILHKEILSLENQ

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