Scaffold SRS022532_LANL_scaffold_1058

Overview

Basic Information

• Taxon OID: 7000000002
• Scaffold ID: SRS022532_LANL_scaffold_1058
• Source Dataset Name: Human buccal mucosa microbial communities from NIH, USA - visit 1, subject 809635352
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4551
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (81.82%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Human → Digestive System → Oral Cavity → Buccal Mucosa → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Source Dataset Sampling Location

• Location Name: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173

Associated Families

Family	Category	Number of Sequences	3D Structure?
F027205	Metagenome	195	N
F036281	Metagenome	170	N
F051214	Metagenome	144	N
F071329	Metagenome	122	N

Sequences

Protein ID	Family	RBS	Sequence
SRS022532_LANL_scaffold_1058__gene_2235	F036281	GAG	MFSLIRVSEGPVDIYELRMQYLAKLKQTDGVMLPTFIYRNKDLFVTDFKPTCDDQWIMYMTNAEGLITKMRIKNGDLMSNGSVLFLAEERKTYNAKEYYDYWSAREGKPAPFFYESRQYHVKSFMRVPGSTDLWITAERETGHWYTFRMSDDQKSKFTRHTMTNEKGHQSYDWVLENVEWAADTIRYF
SRS022532_LANL_scaffold_1058__gene_2236	F027205	AGGA	VASRLIVSADDILKAVKESEAFERKALSEARKRDRDEGKEPRETLYPNPDLKPGREIVLDYIKNPERRRTPRCSVHLEKRTANNSYRFIVDVSQVRNRELADEIEKDLFAFMDYLLDEYDIPRRIRK
SRS022532_LANL_scaffold_1058__gene_2240	F051214	AGGAG	MPGKIVAHDTHLRIDTEFIELKDCFEAFRRGVEYREKNDVDDILVICNAPDIIEYQLKNGDSFIVTYDPIHRIIVMRVFLHDEDITIKPIYIYNNREYQIACEFLRQIMHDKIDLKNEWI
SRS022532_LANL_scaffold_1058__gene_2241	F071329	N/A	MRPLYSKGILMLPVAKIIISGLSSIGAGMIASKLTKPIVSNANGIAKILLWFGSIGTGVAASAIVAREVEKQFDETVKAVKEARDHIEIED