7000000002: Human buccal mucosa microbial communities from NIH, USA - visit 1, subject 809635352

Overview

Basic Information

• IMG/M Taxon OID: 7000000002
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0052466 | Ga0029051
• Sample Name: Human buccal mucosa microbial communities from NIH, USA - visit 1, subject 809635352
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 15878867
• Sequencing Scaffolds: 4
• Novel Protein Genes: 7
• Associated Families: 7

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	2
All Organisms → Viruses → Predicted Viral	2

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Oral Cavity → Buccal Mucosa → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018385	Metagenome	235	Y
F027205	Metagenome	195	N
F036281	Metagenome	170	N
F051214	Metagenome	144	N
F071329	Metagenome	122	N
F081456	Metagenome	114	N
F103434	Metagenome	101	N

Associated Scaffolds

Scaffold	Taxonomy	Length
C513869	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	526
SRS022532_LANL_scaffold_10229	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	748
SRS022532_LANL_scaffold_1050	All Organisms → Viruses → Predicted Viral	3110
SRS022532_LANL_scaffold_1058	All Organisms → Viruses → Predicted Viral	4551

Sequences

Scaffold ID	Protein ID	Family	Sequence
C513869	C513869__gene_30750	F018385	MMAEYENQWGPYKEHSIEKDRDPVLDDPIIYGVNTKHFTVTVYSQDGRVNKYWNARILKDDLGYCRIACPRDGKILCFNWVHWTTYMFTHDGL
SRS022532_LANL_scaffold_10229	SRS022532_LANL_scaffold_10229__gene_22173	F103434	KEGRTGRRFERGETFVIDKVLVQPSAGNALKATENRVIRGDLTDETTLKVFGTGRKWPGGPHSWVKIIKGPESLVGKTFQQAGEPLTYDASPMTRHWSVRCDTLGTGSK
SRS022532_LANL_scaffold_1050	SRS022532_LANL_scaffold_1050__gene_2210	F081456	MFEEPPIYYILISLIFLIVFGAISFATWLVWLTPVSFMAKLVMTAIGFLLCAITVILYTISAD
SRS022532_LANL_scaffold_1058	SRS022532_LANL_scaffold_1058__gene_2235	F036281	MFSLIRVSEGPVDIYELRMQYLAKLKQTDGVMLPTFIYRNKDLFVTDFKPTCDDQWIMYMTNAEGLITKMRIKNGDLMSNGSVLFLAEERKTYNAKEYYDYWSAREGKPAPFFYESRQYHVKSFMRVPGSTDLWITAERETGHWYTFRMSDDQKSKFTRHTMTNEKGHQSYDWVLENVEWAADTIRYF
SRS022532_LANL_scaffold_1058	SRS022532_LANL_scaffold_1058__gene_2236	F027205	VASRLIVSADDILKAVKESEAFERKALSEARKRDRDEGKEPRETLYPNPDLKPGREIVLDYIKNPERRRTPRCSVHLEKRTANNSYRFIVDVSQVRNRELADEIEKDLFAFMDYLLDEYDIPRRIRK
SRS022532_LANL_scaffold_1058	SRS022532_LANL_scaffold_1058__gene_2240	F051214	MPGKIVAHDTHLRIDTEFIELKDCFEAFRRGVEYREKNDVDDILVICNAPDIIEYQLKNGDSFIVTYDPIHRIIVMRVFLHDEDITIKPIYIYNNREYQIACEFLRQIMHDKIDLKNEWI
SRS022532_LANL_scaffold_1058	SRS022532_LANL_scaffold_1058__gene_2241	F071329	MRPLYSKGILMLPVAKIIISGLSSIGAGMIASKLTKPIVSNANGIAKILLWFGSIGTGVAASAIVAREVEKQFDETVKAVKEARDHIEIED