Scaffold Ga0370516_000543

Overview

Basic Information

• Taxon OID: 3300034696
• Scaffold ID: Ga0370516_000543
• Source Dataset Name: Hot spring water microbial communities from Yellowstone National Park, WY, United States - YNP_Buffalopool_103118
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 19104
• Total Scaffold Genes: 28
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (50.00%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Associated Families: 6

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → unclassified Burkholderiales → Burkholderiales bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Water → Hot Spring Sediment Microbial Communities From Yellowstone National Park, Wy, United States

Source Dataset Sampling Location

• Location Name: USA: Wyoming
• Coordinates
  • Lat. (^o): 44.5324
  • Long. (^o): -110.7974

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009254	Metagenome / Metatranscriptome	320	N
F011084	Metagenome / Metatranscriptome	295	Y
F013065	Metagenome / Metatranscriptome	274	N
F020182	Metagenome / Metatranscriptome	225	N
F036248	Metagenome / Metatranscriptome	170	Y
F096802	Metagenome / Metatranscriptome	104	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0370516_000543_10702_10830	F096802	GGCGG	MALCVRYLHRHPLELSHLPAAALADLIALANAEADAYAEALP
Ga0370516_000543_18532_18726	F020182	AGGA	MLLARECVVTVYARRVLRVELQGRVQLLAPWESAASLTHKLHALFGIPAPAEPCRECPDRGFPS
Ga0370516_000543_4652_5179	F036248	AGGAGG	MVKLFSIDEIRDMMGSVEPIEGCLVVEVNLQPMQVAFTTEKPAEDMKYFQYEGEYDPRACIPLFAQSPVYGVFLGPVQGGIPLAILSPVRGAKFGVASFRGGEHKFNLIINDPAAIAFLREKGVVRLGDRVVVAFAYDPKKVEWAKAHGGKFFSELKAWVFPAECEEKVKEVLLG
Ga0370516_000543_5176_5628	F011084	AGGAGG	MTHHGDTIVADEIVRGGRRDYVPAENWRELEENWRELEPAARKCLQSRGVPVSEAGNFDCPEQLAERAKFGFELFWAQSDLPLGAALAAWRRQVLGASDYASFALQHGVAQRVVQLLERHNRIPLRADARRRLERAYRLPHGFFDGLVDE
Ga0370516_000543_9444_9818	F009254	N/A	VRLEIAEAHLRNFLARVVGVPIVSVPTELPAGSAVAGVLSLQSREAGKAIGGIRAVYQLEVLASDAIPDAERRRLYETLASHIIRTELAAERDWLPMLDYQVFLEELNSERLRVRLEVEWNADE
Ga0370516_000543_9853_10275	F013065	N/A	MARRIARDAAIAIQLGGVDDGSPITWGAATQIEGKCSEISIDYRSQTVNLAGLSDAYARMRSAGAAEYTIRIRAFIPSDSFDFYVSGNPPLHHRARVRIKPRSTLATDAEYTGVITRWSWSAQAGQEQIEEIEIVGPLDV