Scaffold Ga0310147_000039

Overview

Basic Information

• Taxon OID: 3300034683
• Scaffold ID: Ga0310147_000039
• Source Dataset Name: Fracking water microbial communities from deep shales in Oklahoma, United States - K-7-3
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 148369
• Total Scaffold Genes: 174
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 135 (77.59%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Fracking Water → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location

• Location Name: USA: Oklahoma
• Coordinates
  • Lat. (^o): 35.812
  • Long. (^o): -98.262
  • Depth (m): 2943

Associated Families

Family	Category	Number of Sequences	3D Structure?
F075996	Metagenome / Metatranscriptome	118	N
F077200	Metagenome / Metatranscriptome	117	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0310147_000039_1653_2333	F075996	AGAAGG	MLNSSTGQAVGVLLPYWSYIPTDRISPKGLLYPVSQIMKEGNLLRFVMLVGGAKEEVSMAGKDFFWSDVNKMYLPEYCLIDITAKFRDRICTFTGLYAGKDGLFVNGKKAGSFKDISSIFAHYGLSEVWNLITGDIRPSCGVYRYGRLFVPETEVCLGLISERANFPKGYDMKDLGRVERILEDAGVFEIPEEISLADVEEKLSKFAEVEKILDGFADRDEETLLR
Ga0310147_000039_52673_53434	F077200	AGGAG	MVKFTVIEVKTQPNLKRIEEYAKRYGMTTEEALSKKRIGEDYFPIRDQQVVSVGLLNFVSEKEDSVGIMAAIYTGEEKKVLEETAKKLEKVVKATGKPFFITGDGRKYALELLAGRAMAHMIEAKRKDQEIIPEMKEMIKLLSSTKNGYLKPFDVRDSIDLQAAFGLGTDRTPAPDSLRYENKDLPALAEETKRSVLDMMTNYAAYLESQGEKIKPVVYKLNEKIFKTVEIFKFPEEEPDMEKGEINIVDIDR