NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0314788_108721

Scaffold Ga0314788_108721


Overview

Basic Information
Taxon OID3300034666 Open in IMG/M
Scaffold IDGa0314788_108721 Open in IMG/M
Source Dataset NameMetatranscriptome of lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C8R2 (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)633
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil → Soil Microbial Communities From West Virginia University Organic Research Farm, Morgantown, Wv, United States

Source Dataset Sampling Location
Location NameUSA: West Virginia
CoordinatesLat. (o)39.6475Long. (o)-79.9369Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010326Metagenome / Metatranscriptome305Y
F076800Metagenome / Metatranscriptome117Y

Sequences

Protein IDFamilyRBSSequence
Ga0314788_108721_3_281F076800N/AGGDDILDGDVIEETMMKHYRGLVPCLMQERKRNAGISEMSLDFVVRGTGKVSAVKVNNQKGGSFANCVLGRMPTFPKYNGNKTIASWSMSMR
Ga0314788_108721_356_631F010326N/ATREIIVSILEGEGAEGKGGNFKISEEREATCFVSTPGELLAIGRVIRVELKDSYVSLATAKDERFAFAYQDVLGFKLAAPAQHKERSAGFR
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.