 |
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300034654 Open in IMG/M |
| Scaffold ID | Ga0326741_008530 Open in IMG/M |
| Source Dataset Name | Seawater viral communities from Mid-Atlantic Ridge, Atlantic Ocean - 487_2244 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 1971 |
| Total Scaffold Genes | 6 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 4 (66.67%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (50.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Acidiferrobacterales → Acidiferrobacteraceae → unclassified Acidiferrobacteraceae → Acidiferrobacteraceae bacterium | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Unclassified → Unclassified → Filtered Seawater → Extreme Environments Viral Communities From Various Locations |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Atlantic Ocean | |||||||
| Coordinates | Lat. (o) | 13.5136 | Long. (o) | -44.9628 | Alt. (m) | Depth (m) | 2244 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000567 | Metagenome / Metatranscriptome | 1020 | Y |
| F013896 | Metagenome / Metatranscriptome | 267 | Y |
| F045144 | Metagenome / Metatranscriptome | 153 | Y |
| F090868 | Metagenome | 108 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0326741_008530_1_174 | F000567 | N/A | LLKLTQKITTWHEGMFKYITLKSKTSIFFTWLLVFLCLYEIFEHIIIPLALIWWSLK |
| Ga0326741_008530_1641_1790 | F090868 | GGAG | MKNTKQLYHRLVKRGIINKDIQMKEVKKMFHDVSKYNAKEDVEKLYEKK |
| Ga0326741_008530_171_500 | F013896 | GGAG | MICDKCNGNGFTLVKGKTVQCKKCLSSGELPGTSTPPKYLDNDLTDVYQTLYETSLRLSDDNDPGLVAASLMAIGSRIYKTILTPEDYDRIMEKIIDTDVKPYKKVTLQ |
| Ga0326741_008530_556_1263 | F045144 | N/A | MRSTHACSTQPPRKRQSIYDPTFKKYYNSRDRFLTWQKGLYYHLNRTGKSLRKYPDGKDPQKQELFGKTRVCTKCKKRKSTLKFHWKTDYSYKDKVTKRLQRFCGVCRVKHDNDKYSASADAYLRRKILNLQQDCHRHRGRKKVQLSYDKFYNEWKKQFNKTGLTCPLSGETMTHSLGNGAVLTNISVDRIDSDKNYTRGNIQFVCLMANLMKNKYNNKTLLGWSKKIVTHLENQ |
| ⦗Top⦘ |
|
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |