Scaffold Ga0326756_008537

Overview

Basic Information

• Taxon OID: 3300034629
• Scaffold ID: Ga0326756_008537
• Source Dataset Name: Seawater viral communities from Mid-Atlantic Ridge, Atlantic Ocean - 543_2600
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1160
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Filtered Seawater → Extreme Environments Viral Communities From Various Locations

Source Dataset Sampling Location

• Location Name: Atlantic Ocean
• Coordinates
  • Lat. (^o): 14.7528
  • Long. (^o): -44.9788
  • Depth (m): 2600

Associated Families

Family	Category	Number of Sequences	3D Structure?
F021398	Metagenome	219	Y
F062672	Metagenome	130	Y
F091864	Metagenome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0326756_008537_160_306	F062672	AGGAG	MDDDYSLIPPKCPHCRAMPVNDETVPKWMIREYGECHCDKDQEEEEES
Ga0326756_008537_303_416	F091864	AGGAGG	MNKRKLGLIGPIIKDNHQHQCNSECRGDIHMIERKAC
Ga0326756_008537_410_628	F021398	GAGG	MLDTEHPMMGFHCPMTQEHITLTFGYLSNEPMMPIYKGEDLVAMIPRDVLIAALKEGWGGTESGWWVDPGKN