Scaffold Ga0326756_003159

Overview

Basic Information

• Taxon OID: 3300034629
• Scaffold ID: Ga0326756_003159
• Source Dataset Name: Seawater viral communities from Mid-Atlantic Ridge, Atlantic Ocean - 543_2600
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2067
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (28.57%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Filtered Seawater → Extreme Environments Viral Communities From Various Locations

Source Dataset Sampling Location

• Location Name: Atlantic Ocean
• Coordinates
  • Lat. (^o): 14.7528
  • Long. (^o): -44.9788
  • Depth (m): 2600

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009536	Metagenome / Metatranscriptome	316	Y
F013896	Metagenome / Metatranscriptome	267	Y
F077783	Metagenome	117	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0326756_003159_1682_2026	F013896	N/A	MVGLSMICDKCNGNGFTIVKGKTVQCKKCLSSGELPGTPTPPKYLDDDLANVYQTLYEESLKLSGDNDPGMVAASLMAIGSRIYKTILTPEDYDNMMEKILKTDVQPYKKETLQ
Ga0326756_003159_940_1518	F009536	N/A	MQKEVMKQALELMPGELKEEIKINLENSKSYTRLFVKIVEEINNMKVSLPKFTGLKNSILKINKQAHSKITDEIKNSTPKAQSTLNVKDIEYWLQTAKKGESLIYYTGRTLDYPKSSQEEAVFRKARNLAMDYDSIPIKNKKYQYRGSVRGEWGCNYKDIITLIQKKVARLQKDKEGNIISYPIYNYMMIKI
Ga0326756_003159_95_256	F077783	GGAG	MTPIEYKVLYDSWYECSRAAHQESIKIYSKMGYKIINDGKIATRYTCTEVSSI