NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Metagenome Family F077783

Metagenome Family F077783

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
Select file to download:
   Download


Overview

Basic Information
Family ID F077783
Family Type Metagenome
Number of Sequences 117
Average Sequence Length 50 residues
Representative Sequence MPPVQSPILYDSWYECSRAAHQESIKIYSKLGYKVVNESRLATRYTCRVADSI
Number of Associated Samples 73
Number of Associated Scaffolds 117

Quality Assessment
Transcriptomic Evidence No
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 27.59 %
% of genes near scaffold ends (potentially truncated) 66.67 %
% of genes from short scaffolds (< 2000 bps) 94.02 %
Associated GOLD sequencing projects 62
AlphaFold2 3D model prediction Yes
3D model pTM-score0.50

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
Powered by Skylign

Most Common Taxonomy
Group Unclassified (84.615 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine
(47.008 % of family members)
Environment Ontology (ENVO) Unclassified
(96.581 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Saline → Water (saline)
(88.889 % of family members)



 ⦗Top⦘

Multiple Sequence Alignments

Select alignment to view:      


 ⦗Top⦘

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 29.63%    β-sheet: 0.00%    Coil/Unstructured: 70.37%
Feature Viewer
Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.50
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


 ⦗Top⦘

Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 117 Family Scaffolds
PF01327Pep_deformylase 7.69
PF00313CSD 2.56
PF00149Metallophos 2.56
PF137592OG-FeII_Oxy_5 1.71
PF00120Gln-synt_C 0.85
PF136402OG-FeII_Oxy_3 0.85

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 117 Family Scaffolds
COG0242Peptide deformylaseTranslation, ribosomal structure and biogenesis [J] 7.69


 ⦗Top⦘

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
UnclassifiedrootN/A84.62 %
All OrganismsrootAll Organisms14.53 %
unclassified Hyphomonasno rankunclassified Hyphomonas0.85 %

Visualization
Powered by ApexCharts

Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300001719|JGI24654J20067_1010104All Organisms → Viruses → environmental samples → uncultured virus724Open in IMG/M
3300001732|JGI24652J20063_1018516Not Available763Open in IMG/M
3300001733|JGI24655J20075_1015559Not Available781Open in IMG/M
3300001733|JGI24655J20075_1028512Not Available526Open in IMG/M
3300001735|JGI24520J20079_1011241Not Available514Open in IMG/M
3300002484|JGI25129J35166_1018523Not Available1636Open in IMG/M
3300002511|JGI25131J35506_1007033All Organisms → cellular organisms → Bacteria → Proteobacteria1578Open in IMG/M
3300002511|JGI25131J35506_1009553Not Available1342Open in IMG/M
3300002511|JGI25131J35506_1026398Not Available797Open in IMG/M
3300002511|JGI25131J35506_1029001Not Available760Open in IMG/M
3300002511|JGI25131J35506_1036514Not Available678Open in IMG/M
3300002760|JGI25136J39404_1017371Not Available1298Open in IMG/M
3300002760|JGI25136J39404_1047120Not Available798Open in IMG/M
3300002760|JGI25136J39404_1063032Not Available690Open in IMG/M
3300002760|JGI25136J39404_1068671Not Available660Open in IMG/M
3300002760|JGI25136J39404_1113163Not Available513Open in IMG/M
3300006076|Ga0081592_1093314Not Available1212Open in IMG/M
3300006091|Ga0082018_1062947Not Available667Open in IMG/M
3300006164|Ga0075441_10287594Not Available602Open in IMG/M
3300006308|Ga0068470_1163408All Organisms → Viruses → environmental samples → uncultured virus951Open in IMG/M
3300006308|Ga0068470_1341841Not Available530Open in IMG/M
3300006311|Ga0068478_1201312Not Available678Open in IMG/M
3300006324|Ga0068476_1452794Not Available592Open in IMG/M
3300006336|Ga0068502_1396477Not Available1552Open in IMG/M
3300006338|Ga0068482_1204113All Organisms → cellular organisms → Bacteria1976Open in IMG/M
3300006338|Ga0068482_1857310Not Available596Open in IMG/M
3300006340|Ga0068503_10302473Not Available2209Open in IMG/M
3300006340|Ga0068503_10376357Not Available581Open in IMG/M
3300006340|Ga0068503_10441515All Organisms → Viruses → environmental samples → uncultured virus996Open in IMG/M
3300006340|Ga0068503_10460565Not Available675Open in IMG/M
3300006340|Ga0068503_10483658Not Available1048Open in IMG/M
3300006340|Ga0068503_10655478Not Available864Open in IMG/M
3300006736|Ga0098033_1147130Not Available661Open in IMG/M
3300006736|Ga0098033_1180437Not Available587Open in IMG/M
3300006738|Ga0098035_1184858Not Available699Open in IMG/M
3300006738|Ga0098035_1324332unclassified Hyphomonas → Hyphomonas sp.500Open in IMG/M
3300006751|Ga0098040_1103553Not Available856Open in IMG/M
3300006751|Ga0098040_1187765Not Available606Open in IMG/M
3300006753|Ga0098039_1105515Not Available970Open in IMG/M
3300006753|Ga0098039_1111795All Organisms → Viruses → environmental samples → uncultured virus939Open in IMG/M
3300006753|Ga0098039_1208258Not Available662Open in IMG/M
3300006753|Ga0098039_1290232Not Available547Open in IMG/M
3300006754|Ga0098044_1236175Not Available711Open in IMG/M
3300006754|Ga0098044_1407076Not Available511Open in IMG/M
3300006900|Ga0066376_10229820Not Available1103Open in IMG/M
3300006923|Ga0098053_1068578Not Available723Open in IMG/M
3300006924|Ga0098051_1095809All Organisms → Viruses → environmental samples → uncultured virus798Open in IMG/M
3300006926|Ga0098057_1092806Not Available736Open in IMG/M
3300006926|Ga0098057_1183332Not Available511Open in IMG/M
3300006927|Ga0098034_1207807Not Available545Open in IMG/M
3300006929|Ga0098036_1049150Not Available1313Open in IMG/M
3300008217|Ga0114899_1133569Not Available817Open in IMG/M
3300008217|Ga0114899_1139789Not Available793Open in IMG/M
3300008219|Ga0114905_1010833Not Available3828Open in IMG/M
3300008220|Ga0114910_1052803All Organisms → Viruses → Predicted Viral1297Open in IMG/M
3300008220|Ga0114910_1066765Not Available1120Open in IMG/M
3300008220|Ga0114910_1161068Not Available634Open in IMG/M
3300009418|Ga0114908_1038386Not Available1775Open in IMG/M
3300009418|Ga0114908_1268793Not Available511Open in IMG/M
3300009481|Ga0114932_10803023Not Available545Open in IMG/M
3300009595|Ga0105214_100899Not Available1273Open in IMG/M
3300009595|Ga0105214_114222Not Available597Open in IMG/M
3300009602|Ga0114900_1041518Not Available1464Open in IMG/M
3300009603|Ga0114911_1116774Not Available767Open in IMG/M
3300009604|Ga0114901_1151905Not Available694Open in IMG/M
3300009619|Ga0105236_1053223Not Available542Open in IMG/M
3300009620|Ga0114912_1056180Not Available993Open in IMG/M
3300010155|Ga0098047_10346385Not Available558Open in IMG/M
3300012950|Ga0163108_10238437Not Available1168Open in IMG/M
3300021791|Ga0226832_10110133Not Available1014Open in IMG/M
3300021791|Ga0226832_10528302Not Available511Open in IMG/M
(restricted) 3300024517|Ga0255049_10406268Not Available629Open in IMG/M
(restricted) 3300024518|Ga0255048_10153942Not Available1127Open in IMG/M
3300025046|Ga0207902_1005435Not Available1252Open in IMG/M
3300025046|Ga0207902_1014041Not Available898Open in IMG/M
3300025046|Ga0207902_1025921Not Available704Open in IMG/M
3300025046|Ga0207902_1038745Not Available591Open in IMG/M
3300025049|Ga0207898_1004405All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → unclassified Candidatus Pelagibacter → Candidatus Pelagibacter sp. TMED2751632Open in IMG/M
3300025052|Ga0207906_1035573Not Available680Open in IMG/M
3300025096|Ga0208011_1114661Not Available561Open in IMG/M
3300025103|Ga0208013_1106808Not Available701Open in IMG/M
3300025112|Ga0209349_1051189Not Available1290Open in IMG/M
3300025125|Ga0209644_1010741Not Available1905Open in IMG/M
3300025125|Ga0209644_1026114Not Available1285Open in IMG/M
3300025125|Ga0209644_1026350Not Available1280Open in IMG/M
3300025125|Ga0209644_1037400Not Available1092Open in IMG/M
3300025125|Ga0209644_1050610Not Available950Open in IMG/M
3300025125|Ga0209644_1096552All Organisms → Viruses → environmental samples → uncultured virus698Open in IMG/M
3300025133|Ga0208299_1086806All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Pelagibacter phage HTVC034P1085Open in IMG/M
3300025218|Ga0207882_1034665Not Available720Open in IMG/M
3300025218|Ga0207882_1045837Not Available610Open in IMG/M
3300025247|Ga0207880_1005813All Organisms → Viruses2164Open in IMG/M
3300025251|Ga0208182_1005543All Organisms → Viruses → Predicted Viral4107Open in IMG/M
3300025259|Ga0207876_1052151Not Available530Open in IMG/M
3300025280|Ga0208449_1061415Not Available974Open in IMG/M
3300025286|Ga0208315_1149745Not Available521Open in IMG/M
3300025301|Ga0208450_1027833Not Available1547Open in IMG/M
3300025301|Ga0208450_1034278All Organisms → Viruses → Predicted Viral1341Open in IMG/M
3300025305|Ga0208684_1070141All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon920Open in IMG/M
3300025873|Ga0209757_10014941Not Available2109Open in IMG/M
3300025873|Ga0209757_10078389Not Available995Open in IMG/M
3300026103|Ga0208451_1006516Not Available1134Open in IMG/M
3300026103|Ga0208451_1019463Not Available754Open in IMG/M
3300026115|Ga0208560_1034200Not Available507Open in IMG/M
3300026253|Ga0208879_1082503Not Available1426Open in IMG/M
3300027755|Ga0209034_10179796All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → unclassified Rhodospirillaceae → Rhodospirillaceae bacterium658Open in IMG/M
3300027838|Ga0209089_10387451Not Available777Open in IMG/M
3300028039|Ga0256380_1042110Not Available710Open in IMG/M
3300031803|Ga0310120_10504036Not Available606Open in IMG/M
3300031804|Ga0310124_10508559Not Available704Open in IMG/M
3300032032|Ga0315327_10808844All Organisms → cellular organisms → Bacteria568Open in IMG/M
3300032048|Ga0315329_10281078Not Available882Open in IMG/M
3300032820|Ga0310342_101196285Not Available898Open in IMG/M
3300034629|Ga0326756_003159Not Available2067Open in IMG/M
3300034655|Ga0326746_002589Not Available1602Open in IMG/M
3300034655|Ga0326746_004933Not Available1182Open in IMG/M

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).



 ⦗Top⦘

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
MarineEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Marine47.01%
Deep OceanEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean22.22%
MarineEnvironmental → Aquatic → Marine → Oceanic → Aphotic Zone → Marine11.11%
Marine OceanicEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Marine Oceanic5.13%
Filtered SeawaterEnvironmental → Aquatic → Marine → Unclassified → Unclassified → Filtered Seawater2.56%
MarineEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Marine1.71%
SeawaterEnvironmental → Aquatic → Marine → Inlet → Unclassified → Seawater1.71%
SeawaterEnvironmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater1.71%
Hydrothermal Vent FluidsEnvironmental → Aquatic → Marine → Hydrothermal Vents → Diffuse Flow → Hydrothermal Vent Fluids1.71%
SeawaterEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Seawater0.85%
SeawaterEnvironmental → Aquatic → Marine → Oceanic → Photic Zone → Seawater0.85%
MarineEnvironmental → Aquatic → Marine → Unclassified → Unclassified → Marine0.85%
SeawaterEnvironmental → Aquatic → Marine → Pelagic → Unclassified → Seawater0.85%
Diffuse Hydrothermal FluidsEnvironmental → Aquatic → Marine → Hydrothermal Vents → Diffuse Flow → Diffuse Hydrothermal Fluids0.85%
Deep SubsurfaceEnvironmental → Aquatic → Marine → Volcanic → Unclassified → Deep Subsurface0.85%

Visualization
Powered by ApexCharts



Associated Samples

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Taxon OIDSample NameHabitat TypeIMG/M Link
3300001719Marine viral communities from the Deep Pacific Ocean - MSP-109EnvironmentalOpen in IMG/M
3300001732Marine viral communities from the Deep Pacific Ocean - MSP-97EnvironmentalOpen in IMG/M
3300001733Marine viral communities from the Deep Pacific Ocean - MSP112EnvironmentalOpen in IMG/M
3300001735Marine viral communities from the Pacific Ocean - LP-45EnvironmentalOpen in IMG/M
3300002484Marine viral communities from the Pacific Ocean - ETNP_2_130EnvironmentalOpen in IMG/M
3300002511Marine viral communities from the Pacific Ocean - ETNP_2_1000EnvironmentalOpen in IMG/M
3300002760Marine viral communities from the Pacific Ocean - ETNP_6_1000EnvironmentalOpen in IMG/M
3300006076Microbial communities in diffuse hydrothermal fluids of Manus Basin, Bismarck Sea ? fluid AEnvironmentalOpen in IMG/M
3300006091Marine microbial communities from the Eastern Tropical South Pacific Oxygen Minumum Zone, cruise NBP1315, 2013 - sample NBP125EnvironmentalOpen in IMG/M
3300006164Marine microbial communities from the West Antarctic Peninsula - Coastal water metaG002-DNAEnvironmentalOpen in IMG/M
3300006308Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT229_2_0500mEnvironmentalOpen in IMG/M
3300006311Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT231_1_1000mEnvironmentalOpen in IMG/M
3300006324Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT231_1_0500mEnvironmentalOpen in IMG/M
3300006336Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT238_2_0500mEnvironmentalOpen in IMG/M
3300006338Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT232_1_0770mEnvironmentalOpen in IMG/M
3300006340Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT238_2_0770mEnvironmentalOpen in IMG/M
3300006736Marine viral communities from the Subarctic Pacific Ocean - 1_ETSP_OMZ_AT15124 metaGEnvironmentalOpen in IMG/M
3300006738Marine viral communities from the Subarctic Pacific Ocean - 3_ETSP_OMZ_AT15126 metaGEnvironmentalOpen in IMG/M
3300006751Marine viral communities from the Subarctic Pacific Ocean - 7_ETSP_OMZ_AT15161 metaGEnvironmentalOpen in IMG/M
3300006753Marine viral communities from the Subarctic Pacific Ocean - 6_ETSP_OMZ_AT15160 metaGEnvironmentalOpen in IMG/M
3300006754Marine viral communities from the Subarctic Pacific Ocean - 10_ETSP_OMZ_AT15264 metaGEnvironmentalOpen in IMG/M
3300006900Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Knorr_S15_td_Bottom_ad_5009_LV_AEnvironmentalOpen in IMG/M
3300006923Marine viral communities from the Subarctic Pacific Ocean - 15B_ETSP_OMZ_AT15312_CsCl metaGEnvironmentalOpen in IMG/M
3300006924Marine viral communities from the Subarctic Pacific Ocean - 14B_ETSP_OMZ_AT15311_CsCl metaGEnvironmentalOpen in IMG/M
3300006926Marine viral communities from the Subarctic Pacific Ocean - 18_ETSP_OMZAT15316 metaGEnvironmentalOpen in IMG/M
3300006927Marine viral communities from the Subarctic Pacific Ocean - 2_ETSP_OMZ_AT15125 metaGEnvironmentalOpen in IMG/M
3300006929Marine viral communities from the Subarctic Pacific Ocean - 4_ETSP_OMZ_AT15127 metaGEnvironmentalOpen in IMG/M
3300008217Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_215EnvironmentalOpen in IMG/M
3300008219Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_b05EnvironmentalOpen in IMG/M
3300008220Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_908EnvironmentalOpen in IMG/M
3300009418Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_s17EnvironmentalOpen in IMG/M
3300009481Deep subsurface microbial communities from Kolumbo volcano to uncover new lineages of life (NeLLi) - 2SBTROV12_ACTIVE470 metaGEnvironmentalOpen in IMG/M
3300009595Marine viral communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling - metaG 3635_2500EnvironmentalOpen in IMG/M
3300009602Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_231EnvironmentalOpen in IMG/M
3300009603Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_904EnvironmentalOpen in IMG/M
3300009604Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_s16EnvironmentalOpen in IMG/M
3300009619Marine viral communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling - metaG 3827_250EnvironmentalOpen in IMG/M
3300009620Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_51EnvironmentalOpen in IMG/M
3300010155Marine viral communities from the Subarctic Pacific Ocean - 12_ETSP_OMZ_AT15267 metaGEnvironmentalOpen in IMG/M
3300012950Marine microbial communities from the Central Pacific Ocean - Fk160115 155m metaGEnvironmentalOpen in IMG/M
3300021791Hydrothermal fluids microbial communities from Mariana Back-Arc Basin vent fields, Pacific Ocean - Daikoku_FS921 150_kmerEnvironmentalOpen in IMG/M
3300024517 (restricted)Seawater microbial communities from Jervis Inlet, British Columbia, Canada - JV7_2_3EnvironmentalOpen in IMG/M
3300024518 (restricted)Seawater microbial communities from Jervis Inlet, British Columbia, Canada - JV7_2_2EnvironmentalOpen in IMG/M
3300025046Marine viral communities from the Pacific Ocean - LP-45 (SPAdes)EnvironmentalOpen in IMG/M
3300025049Marine viral communities from the Pacific Ocean - LP-55 (SPAdes)EnvironmentalOpen in IMG/M
3300025052Marine viral communities from the Pacific Ocean - LP-37 (SPAdes)EnvironmentalOpen in IMG/M
3300025096Marine viral communities from the Subarctic Pacific Ocean - 7_ETSP_OMZ_AT15161 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025103Marine viral communities from the Subarctic Pacific Ocean - 16_ETSP_OMZ_AT15313 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025112Marine viral communities from the Pacific Ocean - ETNP_2_130 (SPAdes)EnvironmentalOpen in IMG/M
3300025125Marine viral communities from the Pacific Ocean - ETNP_2_1000 (SPAdes)EnvironmentalOpen in IMG/M
3300025133Marine viral communities from the Subarctic Pacific Ocean - 15_ETSP_OMZ_AT15312 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025218Marine viral communities from the Deep Pacific Ocean - MSP-103 (SPAdes)EnvironmentalOpen in IMG/M
3300025247Marine viral communities from the Deep Pacific Ocean - MSP-91 (SPAdes)EnvironmentalOpen in IMG/M
3300025251Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_906 (SPAdes)EnvironmentalOpen in IMG/M
3300025259Marine viral communities from the Deep Pacific Ocean - MSP-146 (SPAdes)EnvironmentalOpen in IMG/M
3300025280Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_s17 (SPAdes)EnvironmentalOpen in IMG/M
3300025286Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_215 (SPAdes)EnvironmentalOpen in IMG/M
3300025301Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_908 (SPAdes)EnvironmentalOpen in IMG/M
3300025305Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_b05 (SPAdes)EnvironmentalOpen in IMG/M
3300025873Marine viral communities from the Pacific Ocean - ETNP_6_1000 (SPAdes)EnvironmentalOpen in IMG/M
3300026103Marine viral communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling - metaG 3321_4155 (SPAdes)EnvironmentalOpen in IMG/M
3300026115Marine viral communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling - metaG 3827_250 (SPAdes)EnvironmentalOpen in IMG/M
3300026253Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Knorr_S15_td_Bottom_ad_5009_LV_A (SPAdes)EnvironmentalOpen in IMG/M
3300027755Marine microbial communities from the Southern Atlantic Ocean, analyzing organic carbon cycling - 250m_A/KNORR_S2/LV (SPAdes)EnvironmentalOpen in IMG/M
3300027838Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB2_150 (SPAdes)EnvironmentalOpen in IMG/M
3300028039Seawater viral communities from deep brine pools at the bottom of the Mediterranean Sea - LS1 2300mEnvironmentalOpen in IMG/M
3300031803Marine microbial communities from Western Arctic Ocean, Canada - CB27_AW_983EnvironmentalOpen in IMG/M
3300031804Marine microbial communities from Western Arctic Ocean, Canada - CB11b_AW_Bot5EnvironmentalOpen in IMG/M
3300032032Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 100m 32315EnvironmentalOpen in IMG/M
3300032048Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 500m 32315EnvironmentalOpen in IMG/M
3300032820Marine microbial communities from station ALOHA, North Pacific Subtropical Gyre - S1503-DNA-20-500_MGEnvironmentalOpen in IMG/M
3300034629Seawater viral communities from Mid-Atlantic Ridge, Atlantic Ocean - 543_2600EnvironmentalOpen in IMG/M
3300034655Seawater viral communities from Mid-Atlantic Ridge, Atlantic Ocean - 494_2800EnvironmentalOpen in IMG/M

Geographical Distribution
Zoom:     Powered by OpenStreetMap



 ⦗Top⦘

Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID Sample Taxon ID Habitat Sequence
JGI24654J20067_101010433300001719Deep OceanMTPIRSPTLYDSWYECSRAAHKESLQILSKIGYKVINEGQIATKYSCEMTEII*
JGI24652J20063_101851613300001732Deep OceanFLGENLCMKPVQSDTLYDSWYECSRAAHQESIKIISKLGYKHVNDGKLGTRYVCKINDTV
JGI24655J20075_101555913300001733Deep OceanCMKPVQSRTLYDSWYECSRAAHQESINILSKLGYKYVNDGKIGTRYVCKMNDTV*
JGI24655J20075_102851213300001733Deep OceanSFLGQNLCLPPIQSIILYDSWYECSRAAHKESLQILSKIGYKAVNDAKLGTRYVCKVSESI*
JGI24520J20079_101124123300001735MarineMTPIESPTLYDSWYECSRAAHTESKVILSKLGYKVVNDGKIATRYTCTEVSSI*
JGI25129J35166_101852323300002484MarineMAPIQSPKLYNNWYECSRAAHYESIKIYSKIGYKMVNQARLATRYTCRADEVI*
JGI25131J35506_100703313300002511MarineDSWYECSRAAHQESIKIYSKLGYKIVNESRLATRYTCTADSSI*
JGI25131J35506_100955353300002511MarineMCMAPIESPILYDSWYECSRAAHKESLKIYSKLGYKVVNDGRLATRYNCTPVSSI*
JGI25131J35506_102639813300002511MarineSPVLYDSWYECSRAAHKESLKIYSKLGYKTVNDGKIATRYTCTETSSI*
JGI25131J35506_102900123300002511MarineMCMAPVKSPILYDSWYECSRAAHKESLNILSKIGYKAVNDGKIATRYTCTVSSSI*
JGI25131J35506_103651423300002511MarineMAPVKSPVLYDSWYECSRAAHKESLKILSKIGYAQVNKGKVATRYTCTQTSSI*
JGI25136J39404_101737113300002760MarineMCMAPVKSPILYDSWYECSRAAHQESIKIYSKLGYKVVNESRLATRYTCTEVSSI*
JGI25136J39404_104712023300002760MarineMAPIESPILYDSWYECSRAAHQESVKIYSKLGYKVVNDGRIATRYTCKETSSI*
JGI25136J39404_106303233300002760MarineWYECSRAAHQESMKIYSKIGYKMMNEARLATRYTCAVEKVI*
JGI25136J39404_106433643300002760MarineYNSWYECSRAAHKESLKIYSKLGYKVINDGKIATRYNCTEVSSI*
JGI25136J39404_106867113300002760MarineWYECSRAAHQESMKIYSKIGYKMMNEARLATRYTCKIDEII*
JGI25136J39404_111316313300002760MarineNSWYECSRAAHQESIKLYSKIGYKMMNEARLATRYTCAVEEVV*
Ga0081592_109331443300006076Diffuse Hydrothermal FluidsMPPVQAPILYDSWYECSRAAHQESIKIYSKLGYKLVNENRLATRYTCRVADSI*
Ga0082018_106294713300006091MarineYPKLFNSWYECSRTAHKESIRIYTKLGFKYVNDNKIATRYTCTKESSI*
Ga0075441_1028759413300006164MarineQSTILYNSWYECSRTAHQESIKMLSKLGYKQVNDAKIATRYTCKAAEII*
Ga0068470_116340813300006308MarineMPPVQAPILYDSWYECSRAAHQESVKIYSKLGYKLVNENRLATRYTCRIADSI*
Ga0068470_134184113300006308MarineMPPAQSPILYDSWYECSRAAHHESIKIYSKLGFKLVNDNKLATRYTCRPDDSI*
Ga0068478_120131223300006311MarineMPPVQAPILYDSWYECSRAAHQESIKIYSKLGYKLVNENRLATRYTCRIADSI*
Ga0068476_145279433300006324MarineMPPVQSPALYNSWYECARAAHQESVKIYSKLGYKVVNEARLATRYMCAPEDII*
Ga0068502_139647753300006336MarineMPPVQSPVLYNSWYECSRAAHRESIKIYSKIGYKMMNEARLATRYTCQLENSI*
Ga0068482_120411363300006338MarineMPPVQAPILYDSWYECSRAAHQESIKIYSKLGYKLVNENRLATRYTCQVEDSI*
Ga0068482_185731023300006338MarineMPPVQSPTLYDSWYECSRAAHQESIKIYSKLGYKVVNENRLATRYTCRVADSI*
Ga0068503_1030247353300006340MarineMPPVQSPILYDSWYECSRAAHQESIKIYSKLGYKVVNESRLATRYTCRVADSI*
Ga0068503_1037635723300006340MarineMCMAPVKSPILYNSWYECSRAAHQESIKIYSKLGYKVVNEARLATRYTCTADSSI*
Ga0068503_1044151543300006340MarineMPPVQAPILYDSWYECSRAAHQESIKIYSKLGYKLVNDSRLATRYTCQVDNSI*
Ga0068503_1046056523300006340MarineMPPVQAPILYDSWYECSRAAHQESIKIYSKLGYKLVNDSRLATRYTCQVDDSI*
Ga0068503_1048365843300006340MarineMAPVQSPILYNSWYECSRAAHQESIRIYSRLGYKIVNKNKLATRYTCRVVGSIDIMAELC
Ga0068503_1065547813300006340MarineMAPVESPVLYDSWYECSRAAHQESIKIYSKLGYKVVNDGKIATRYTCTVSSSI*
Ga0098033_114713023300006736MarineMPPIQSPLLYNSWYECSRAAHQESIKIYSKIGYKMVNEARLATRYTCHVEKSI*
Ga0098033_118043713300006736MarineMPPIQVPMLYNSWYECSRAAHRESIKILSKIGYKEVNNAKIGTRYTCRVADSI*
Ga0098035_118485813300006738MarineDSWYECSRAAHRESIKIYSKIGYKMVNEARLATRYTCRPDDSI*
Ga0098035_132433213300006738MarineSVCMPPVQSPVLYDSWYECSRAAHQESLKIYSKLGYKMINENQIATRYTCEQQNVI*
Ga0098040_110355343300006751MarineYDSWYECSRAAHRESIKIYSKIGYKMVNEARLATRYTCQVDDSI*
Ga0098040_118776523300006751MarinePVQAPILYDSWYECSRAAHQESIKIYSKLGYKLVNENRLATRYTCRVANSI*
Ga0098039_110551533300006753MarineMPPIQVPILYDSWYECSRAAHRESIKIYSKLGYKVVNDGRLATRYTCEVEESI*
Ga0098039_111179523300006753MarineMPPIQSPVLYNSWYECSRAAHQESIKIYSKIGYKMMNEARLATRYTCAVEKVI*
Ga0098039_120825813300006753MarineSPVLYNSWYECSRAAHQESIKIYSKIGYKMMNEARLATRYTCAVEKVI*
Ga0098039_129023213300006753MarineMPPIESPILYNSWYECSREAHKESLQILSNLGYKTVNEGKIAMKYMCVPAKSI*
Ga0098044_123617513300006754MarineIQVPILYDSWYECSRAAHRESIKIYSKLGYKVVNDGRLATRYTCEVEESI*
Ga0098044_140707633300006754MarineYNSWYECSRAAHQESIKIYSKIGYKMMNEARLATRYTCKIDEVI*
Ga0066376_1022982013300006900MarineDNLCTKPIQSNTLYDSWYECSRAAHQESMKIISKLGYKYVNDGKLGTKYTCTPSESI*
Ga0098053_106857833300006923MarineLYNSWYECSRAAHQESIKIYSKLGYKVVNESRLGTRYTCRVADSI*
Ga0098051_109580933300006924MarineMPPVQTRILYDSWYECSRAAHRESIKIYSKIGYKMVNEARLATRYTCRPDDSI*
Ga0098057_109280633300006926MarineMSPIQSPVLYNSWYECSRAAHQESIKIYSKIGYKMMNEARLATRYTCAVEKVI*
Ga0098057_118333213300006926MarineNSWYECSRAAHQESIKIYSKLGYKTVNEGRLATRYICKVNDSI*
Ga0098034_120780723300006927MarineMPPVQAPILYDSWYECSRAAHQESVKIYSKLGYKLVNENRLATRYTCRVVDSI*
Ga0098036_104915053300006929MarineLSAQSVCMPPVHSPILYNSWYECSRAAHYESIKIYSKIGYKMVNQARLATRYTCKVVESI
Ga0114899_113356943300008217Deep OceanQTQILYDSWYECSRAAHKESIKIYSKLGYKLVNENRLATRYTCRVADSI*
Ga0114899_113978913300008217Deep OceanNTCMTPIESTNLYNSWYECARAAHTESKKIYSKLGYKYVNENKIATRYTCTNTSST*
Ga0114905_101083323300008219Deep OceanMPPVKTPILYDSWYECSRAAHQESIKIYSKLGYKLVNENRLATRYTCQVIGSI*
Ga0114910_105280353300008220Deep OceanILYNSWYECSRAAHRESIKIYSKIGYKMVNEARLATRYTCQPEESI*
Ga0114910_106676533300008220Deep OceanLYDSWYECSRAAHYESIKIYSKIGYKMVNEARLSTRYTCKVAESI*
Ga0114910_116106823300008220Deep OceanECSRAAHQESIKIYSKLGYKLVNENRLATRYTCQVADSI*
Ga0114908_103838673300009418Deep OceanGICMPPLQTQILYDSWYECSRAAHKESIKIYSKLGYKLVNENRLATRYTCRVADSI*
Ga0114908_126879323300009418Deep OceanSRAAHRESIKIYSKIGYKMVNQARLATRYTCRADEVI*
Ga0114932_1080302323300009481Deep SubsurfaceYECSIAAHRESIKLYSKIGYKMMNEAKLATRYTCEVDKII*
Ga0105214_10089913300009595Marine OceanicIWVCSFLGEHMCMAPVKSPILYNSWYECSRAAHQESIKIYSKLGYKVVNKGRLATRYTCTAATSI*
Ga0105214_11422233300009595Marine OceanicQNLCLPPVQPIILYDSWYECSRAAHKESLRILSKIGYKEVNDAKLGTRYACKVAESI*
Ga0114900_104151853300009602Deep OceanSVCMPPVHSPVLYNSWYECARAAHYESIKIYSNIGYKMVNQARLATRYTCKVVESI*
Ga0114911_111677433300009603Deep OceanVCMPPIQIPILYNSWYECSRAAHQESTKIYSKLGYKLVNENRLATRYTCRVADSI*
Ga0114901_115190513300009604Deep OceanVQSPALYNSWYECARAAHQESIKIYSKIGYKMVNEARLATRYTCYVEESI*
Ga0105236_105322323300009619Marine OceanicVLYNSWYECSRAAHQESIKIYAKIGYKMMNEARLATRYTCKIDEII*
Ga0114912_105618013300009620Deep OceanTQILYDSWYECSRAAHKESIKIYSKLGYKLVNENRLATRYTCRVADSI*
Ga0098047_1034638513300010155MarineCMPPIQSPVLYNSWYECSRAAHQESIKIYAKIGYKMMNEARLATRYTCAVEKVI*
Ga0163108_1023843733300012950SeawaterWYECSRAAHYESIKIYSKIGYKMVNQARLATRYTCRADEVI*
Ga0226832_1011013313300021791Hydrothermal Vent FluidsDSWYECSRAAHQESIKIMSKMGYKLVNEAHVAMKYRCTAEKVI
Ga0226832_1052830213300021791Hydrothermal Vent FluidsECSRAAHQESLKIYAKIGYKIMNEARLATRYTCKIDEII
(restricted) Ga0255049_1040626823300024517SeawaterECSRAAHQESIKIYSKIGYKTLNEGRLATRYMCTAEDII
(restricted) Ga0255048_1015394213300024518SeawaterYNSWYECARAAHRESIKIYSKIGYKMVNDARLATRYMCTPEDII
Ga0207902_100543543300025046MarineDSWYECSRAAHQESIKIYSKLGYKVVNEARLATRYTCTPGQTI
Ga0207902_101404113300025046MarineVLYDSWYECSRAAHQESIKIYSKMGYKIVNDGKIATRYTCTAVSSI
Ga0207902_102592113300025046MarineSWYECSLAAHQKSIKIYSKLGYKVVNENKLATRYTCQVLDSI
Ga0207902_103874513300025046MarineMAPVQSPILYDSWYECSRAAHKESLQILSKLGYKAVNDAKIAMKYTCTLSESI
Ga0207898_100440553300025049MarineMAPIKYKVLYDSWYECSRAAHQESIKIYSKMGYKIVNDGKIATRYTCTAVSSI
Ga0207906_103557333300025052MarineMESPLLYNSWYECSRAAHQESIKIYSTIGYKIVNEARLATRYTCSLDESI
Ga0208011_111466123300025096MarineVCMAPIESPKLYNNWYECSRAAHYESIKIYSKIGYKMVNQARLATRYTCKVVESI
Ga0208013_110680813300025103MarineILYNSWYECSRAAHQESIKIYSKLGYKTVNEGRLATRYICKVNDSI
Ga0209349_105118943300025112MarineSRAAHQESIKIYSKIGYKMMNEARLATRYTCAVEKVI
Ga0209644_101074163300025125MarineMCMAPIKSTILYDSWYECSRAAHKESIKILSKIGYKEVNDGKIAMKYTCIAEQIV
Ga0209644_102611433300025125MarineMPPIQSPVLYNSWYECSRAAHQESMKIYSKIGYKMMNEARLATRYTCAVEKVI
Ga0209644_102635013300025125MarineYECSRAAHQESIKIYSKLGYKVVNKGRLATRYTCTPEQTI
Ga0209644_103740013300025125MarineQNMCMAPVTYPTLFDSWYECSRAAHQESIKIYSKLGYKIVNESRLATRYTCTADSSI
Ga0209644_105061013300025125MarineSWYECSRAAHQESIKIYSKIGYKMMNEARLATRYTCKIDEII
Ga0209644_109655213300025125MarineMAPIESTIRYNSWYECSRAAHMQSIRIYSRLGYKYVNENKIATRYTCK
Ga0208299_108680663300025133MarineWYECSRAAHQESIKIYSRLGYKTVNEGRLATRYICKVNDSI
Ga0207882_103466513300025218Deep OceanCLAPVQSPILYDSWYECSRAAHKESLQILSKLGYKAVNDGKIAMRYTCTPAESI
Ga0207882_104583733300025218Deep OceanLCTRPIQSDTLYDSWYECSRAAHQESIKIISKLGYKYVNDGKLGTRYVCKINETV
Ga0207880_100581313300025247Deep OceanTPIRSPTLYDSWYECSRAAHKESLQILSKIGYKVINEGQIATKYSCEMTEII
Ga0208182_100554373300025251Deep OceanMPPVKTPILYDSWYECSRAAHQESIKIYSKLGYKLVNENRLATRYTCQVIGSI
Ga0207876_105215113300025259Deep OceanFLGDNLCMKPVQSRTLYDSWYECSRAAHKESLQILSKIGYKEVNDGKLGTRYVCRINDTV
Ga0208449_106141553300025280Deep OceanLYNSWYECSRAAHQESIKIYSKLGYKVVNEGRLATRYTCTADSSI
Ga0208315_114974523300025286Deep OceanVCMPPVQTQILYDSWYECSRAAHKESIKIYSKLGYKLVNENRLATRYTCQVADSI
Ga0208450_102783343300025301Deep OceanMPPIQIPILYNSWYECSRAAHQESIKIYSKLGYKLVNENKLATRYTCRVADSI
Ga0208450_103427853300025301Deep OceanSRAAHRESIKIYSKIGYKMVNEARLATRYTCQPDDSI
Ga0208684_107014113300025305Deep OceanPVQSPILYDSWYECSRAAHQESIRIYSKLGYKVVNDSRLATRYTCRVAESI
Ga0209757_1001494123300025873MarineMAPIKSPILYDSWYECSRVAHKKSLKILSKIGYAQVNKGKVATRYTCTETSSI
Ga0209757_1007838913300025873MarineAPVKSPILYDSWYECSRAAHKESLNILSKIGYKAVNDGKIATRYTCTVSSSI
Ga0208451_100651653300026103Marine OceanicMTPIEYKVLYDSWYECSRAAHQESIKIYSKMGYKIINDGKIATRYTCTAVSSI
Ga0208451_101946313300026103Marine OceanicVQSPILYDSWYECSRAAHKQSLHMLSKMGYKAVNDGKIAMKYTCIPSESI
Ga0208560_103420023300026115Marine OceanicPSVCMPPVQSPVLYNSWYECARAAHQESVKIYSKLGYKVVNEARLATRYMCAPEDII
Ga0208879_108250313300026253MarineLGQNLCMTPIESKILYDSWYECSRAAHIESLKIYSKLGYKIINDGKIATRYTCTELSSV
Ga0209034_1017979633300027755MarineYECSRAAHQESVKIYSKIGYKMMNEAKLATRYTCTAEKII
Ga0209089_1038745133300027838MarineGGQVCMAPIESPILYNSWYECSREAHKESLQILSKMGYKAVNDNKIATRYTCRLVDSV
Ga0256380_104211033300028039SeawaterPSVCMPPIQSPILYNSWYECSRAAHQESIKIYSKIGYKTVNKGRLATRYTCQLDDSI
Ga0310120_1050403633300031803MarinePIQSNTLYDSWYECSRAAHQESIKIISKLGYKHVNDGKLGTRYVCKINDTV
Ga0310124_1050855913300031804MarineYECTRAAHQESVKIYAKMGYKMVNESKLATRYVCTPEDII
Ga0315327_1080884413300032032SeawaterSRAAHRESIKIYSKIGYKMVNEARLATRYTCRPDESI
Ga0315329_1028107813300032048SeawaterRYNSWYECSRAAHMQSIRIYSRLGYKYVNENKIATRYTCKADETI
Ga0310342_10119628543300032820SeawaterGNMCMPPLQSPILYDSWYECSRAAHQESVKIYSKLGYKTVNEARLATRYTCKETSSI
Ga0326756_003159_95_2563300034629Filtered SeawaterMTPIEYKVLYDSWYECSRAAHQESIKIYSKMGYKIINDGKIATRYTCTEVSSI
Ga0326746_002589_2_1723300034655Filtered SeawaterSSDLGRSKSSTLYDSWYECSREAHKKSLKILSKIGYKEINQYKLGTRYTCTPSESI
Ga0326746_004933_2_1423300034655Filtered SeawaterTLFDSWYECSRAAHQESIKIYSKLGYKVVNEARLATRYTCTPGQSI


 ⦗Top⦘


© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.