Scaffold Ga0310146_00103

Overview

Basic Information

• Taxon OID: 3300034524
• Scaffold ID: Ga0310146_00103
• Source Dataset Name: Fracking water microbial communities from deep shales in Oklahoma, United States - K-7-2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 134503
• Total Scaffold Genes: 154
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 120 (77.92%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Fracking Water → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location

• Location Name: USA: Oklahoma
• Coordinates
  • Lat. (^o): 35.812
  • Long. (^o): -98.262
  • Depth (m): 2943

Associated Families

Family	Category	Number of Sequences	3D Structure?
F075996	Metagenome / Metatranscriptome	118	N
F077200	Metagenome / Metatranscriptome	117	N
F105007	Metagenome	100	N
F105008	Metagenome / Metatranscriptome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0310146_00103_119648_120598	F105007	AGGA	MEDADVLEGIYRKFCEKGDISYRESDIVFRIAQRFFSRKSYLSLKDVVPKWYEKVKSKILNGGRGVFMHTVPLGSAEDFYRNLGTTGDPANLACCLTEINDIFREMKRPVCINLVILRDKDQLCTLGDGIPKTLLIKRFDKVNNKNAYRFLRADTLRRLGNFVYIDLDGIKTREFDIACAYRYEMKEKNCAVDRLAQVYAAVFLELENAGIKFLTCSNRAGYAYGYFDELGVFADEKDAERIEGVLKTSDCIAESLKGAVREFSVRDLYLFSPAKDCELSMNDPYFRKLVKSHVSQFFPEKRKDAVEEEEWLDITR
Ga0310146_00103_124162_124986	F105008	N/A	MTAIYDIAREEMTKKGDISLHTADGLFEAFSLIMQFKERVEFLPWYLTVLRETRKGRTGNFTTTVPFVWKKGDVFSAVRDILETLPQRCRTEEILGPVPVVSAPGCAVRNGYAHLSRAGMFDLLFPDHDILFEIPCETGGSFRGLMCRSAAKAAVAAGMSAGIVSFSSEREWFGRAFFCDRESRDVFAELLRLDEELLKIALLEKGAEISGSFPKMFPDCDWLETCDAGTVLNLDGRRYLVGRTPEEALAQGFLSCIRYVKDRLSDDGYLDIIR
Ga0310146_00103_3245_4006	F077200	AGGAG	MVKFTVIEVKTQPNLKRIEEYAKRYGMTTEEALSKKRIGEDYFPIRDQQVVSVGLLNFVSEKEDSVGIMAAIYTGEEKKVLEETAKKLEKVVKATGKPFFITGDGRKYALELLAGRAMAHMIEAKRKDQEIIPEMKEMIKLLSSTKNGYLKPFDVRDSIDLQAAFGLGTDRTPAPDSLRYENKDLPALAEETKRSVLDMMTNYAAYLESQGEKIKPVVYKLNEKIFKTVEIFKFPEEEPDTEKGEINIVDIDR
Ga0310146_00103_54465_55145	F075996	AGAAGG	MLNSSTGQAVGVLLPYWSYIPTDRISPKGLLYPVSQIMKEGDLLRFVMLVGGAKEEVSMAGKDFFWSDVNKMYLPEYCLIDITAKFKDRICTFTGLYAGKDGLFANGKKVGSFKDISGIFAHYGLSEVWNLITGDIRPSCGVYRYGRLFVPETEVCLGLLSERANFPKGYDMKDLGRVERILEDAGVFEIPEEISLADVEEKLSKFAEVEKILDGFADRDEETLLR