3300034524: Fracking water microbial communities from deep shales in Oklahoma, United States - K-7-2

Overview

Basic Information

• IMG/M Taxon OID: 3300034524
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0118431 | Gp0324336 | Ga0310146
• Sample Name: Fracking water microbial communities from deep shales in Oklahoma, United States - K-7-2
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 0
• Sequencing Scaffolds: 5
• Novel Protein Genes: 8
• Associated Families: 6

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria	2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa
• Type: Environmental
• Taxonomy: Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Fracking Water → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): terrestrial biome → planetary subsurface zone → fracking liquid
• Earth Microbiome Project Ontology (EMPO): Unclassified

Location Information

• Location: USA: Oklahoma
• Coordinates
  • Lat. (^o): 35.812
  • Long. (^o): -98.262
  • Alt. (m): N/A
  • Depth (m): 2943

Associated Families

Family	Category	Number of Sequences	3D Structure?
F075996	Metagenome / Metatranscriptome	118	N
F077200	Metagenome / Metatranscriptome	117	N
F088079	Metagenome / Metatranscriptome	109	N
F093744	Metagenome / Metatranscriptome	106	Y
F105007	Metagenome	100	N
F105008	Metagenome / Metatranscriptome	100	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0310146_00103	All Organisms → cellular organisms → Bacteria	134503
Ga0310146_00146	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	112177
Ga0310146_00757	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	36142
Ga0310146_01458	All Organisms → cellular organisms → Bacteria	19460
Ga0310146_01869	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia	14777

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0310146_00103	Ga0310146_00103_119648_120598	F105007	MEDADVLEGIYRKFCEKGDISYRESDIVFRIAQRFFSRKSYLSLKDVVPKWYEKVKSKILNGGRGVFMHTVPLGSAEDFYRNLGTTGDPANLACCLTEINDIFREMKRPVCINLVILRDKDQLCTLGDGIPKTLLIKRFDKVNNKNAYRFLRADTLRRLGNFVYIDLDGIKTREFDIACAYRYEMKEKNCAVDRLAQVYAAVFLELENAGIKFLTCSNRAGYAYGYFDELGVFADEKDAERIEGVLKTSDCIAESLKGAVREFSVRDLYLFSPAKDCELSMNDPYFRKLVKSHVSQFFPEKRKDAVEEEEWLDITR
Ga0310146_00103	Ga0310146_00103_124162_124986	F105008	MTAIYDIAREEMTKKGDISLHTADGLFEAFSLIMQFKERVEFLPWYLTVLRETRKGRTGNFTTTVPFVWKKGDVFSAVRDILETLPQRCRTEEILGPVPVVSAPGCAVRNGYAHLSRAGMFDLLFPDHDILFEIPCETGGSFRGLMCRSAAKAAVAAGMSAGIVSFSSEREWFGRAFFCDRESRDVFAELLRLDEELLKIALLEKGAEISGSFPKMFPDCDWLETCDAGTVLNLDGRRYLVGRTPEEALAQGFLSCIRYVKDRLSDDGYLDIIR
Ga0310146_00103	Ga0310146_00103_3245_4006	F077200	MVKFTVIEVKTQPNLKRIEEYAKRYGMTTEEALSKKRIGEDYFPIRDQQVVSVGLLNFVSEKEDSVGIMAAIYTGEEKKVLEETAKKLEKVVKATGKPFFITGDGRKYALELLAGRAMAHMIEAKRKDQEIIPEMKEMIKLLSSTKNGYLKPFDVRDSIDLQAAFGLGTDRTPAPDSLRYENKDLPALAEETKRSVLDMMTNYAAYLESQGEKIKPVVYKLNEKIFKTVEIFKFPEEEPDTEKGEINIVDIDR
Ga0310146_00103	Ga0310146_00103_54465_55145	F075996	MLNSSTGQAVGVLLPYWSYIPTDRISPKGLLYPVSQIMKEGDLLRFVMLVGGAKEEVSMAGKDFFWSDVNKMYLPEYCLIDITAKFKDRICTFTGLYAGKDGLFANGKKVGSFKDISGIFAHYGLSEVWNLITGDIRPSCGVYRYGRLFVPETEVCLGLLSERANFPKGYDMKDLGRVERILEDAGVFEIPEEISLADVEEKLSKFAEVEKILDGFADRDEETLLR
Ga0310146_00146	Ga0310146_00146_18016_18276	F088079	MLIEKAIWLENVPFRSIDGAIGGQNCSVYFVESMIVGQSCTFCTSRLGNLAPNPYRMLTRLDVFIHICEIYKVDITFFKSNVVSTK
Ga0310146_00757	Ga0310146_00757_34169_34429	F088079	MLTEKAIWLENVPFRNIDGAIGGQNCSVYFVESMFVGQSCTFCTSRLGNLAPNPYRMLTRLDIFIHICEIYKVDITFFKSNVVSTK
Ga0310146_01458	Ga0310146_01458_2711_2971	F088079	MLTEKAIWLENVPFRNVDEAIGRQNCSVYFVESMFVGQSCTFCTSILGNLAPNPYRMLTRLDVFIHICEIYKVDITFFKSNVVSTK
Ga0310146_01869	Ga0310146_01869_4635_4811	F093744	MSLKIGDRVEVNYPVDDFPGHVGIVRDIKETELGTLVICYWAFLDKEIGFFEKSLDLV