NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0348337_101721

Scaffold Ga0348337_101721


Overview

Basic Information
Taxon OID3300034418 Open in IMG/M
Scaffold IDGa0348337_101721 Open in IMG/M
Source Dataset NameAqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Aug_28 (v4)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)934
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location NameUSA: Delaware Bay
CoordinatesLat. (o)39.149325Long. (o)-75.288339Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005415Metagenome401Y
F099208Metagenome103N

Sequences

Protein IDFamilyRBSSequence
Ga0348337_101721_1_162F099208GGAGMGVLVDLKKEEFIGQGFSKKEARTKAHEWCATTNTCRGCSQVVRPGWWSWKQGY
Ga0348337_101721_738_932F005415N/AKELERRPEGARLRQLKELEQKALDTVMEAGTPDSLAIALNEVSKKIGLSWNQDLTALPNIKNEN

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