NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome Family F099208

Metagenome Family F099208

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F099208
Family Type Metagenome
Number of Sequences 103
Average Sequence Length 57 residues
Representative Sequence MGVAVDLKKEEFIGQGFSKKEARTKAHEWCEQTNTCRGCSQVVRLDWWSWKQGYCKDCID
Number of Associated Samples 76
Number of Associated Scaffolds 103

Quality Assessment
Transcriptomic Evidence No
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 68.93 %
% of genes near scaffold ends (potentially truncated) 44.66 %
% of genes from short scaffolds (< 2000 bps) 76.70 %
Associated GOLD sequencing projects 64
AlphaFold2 3D model prediction No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Unclassified (90.291 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous
(35.922 % of family members)
Environment Ontology (ENVO) Unclassified
(46.602 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Saline → Water (saline)
(66.019 % of family members)



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Multiple Sequence Alignments

Select alignment to view:      


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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 28.33%    β-sheet: 6.67%    Coil/Unstructured: 65.00%
Feature Viewer
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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 103 Family Scaffolds
PF03237Terminase_6N 11.65
PF03592Terminase_2 0.97
PF00166Cpn10 0.97

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 103 Family Scaffolds
COG0234Co-chaperonin GroES (HSP10)Posttranslational modification, protein turnover, chaperones [O] 0.97
COG3728Phage terminase, small subunitMobilome: prophages, transposons [X] 0.97


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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
UnclassifiedrootN/A90.29 %
All OrganismsrootAll Organisms9.71 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300000116|DelMOSpr2010_c10025540Not Available2815Open in IMG/M
3300000949|BBAY94_10181634Not Available568Open in IMG/M
3300004097|Ga0055584_101332353Not Available747Open in IMG/M
3300005512|Ga0074648_1155774Not Available686Open in IMG/M
3300005611|Ga0074647_1003167Not Available4806Open in IMG/M
3300006025|Ga0075474_10025733All Organisms → cellular organisms → Bacteria2100Open in IMG/M
3300006637|Ga0075461_10107322Not Available875Open in IMG/M
3300006734|Ga0098073_1022240Not Available941Open in IMG/M
3300006802|Ga0070749_10739877Not Available524Open in IMG/M
3300006867|Ga0075476_10073354Not Available1346Open in IMG/M
3300006867|Ga0075476_10134407Not Available932Open in IMG/M
3300006869|Ga0075477_10358939Not Available571Open in IMG/M
3300006874|Ga0075475_10099043Not Available1317Open in IMG/M
3300006874|Ga0075475_10321613Not Available634Open in IMG/M
3300007234|Ga0075460_10239661Not Available607Open in IMG/M
3300007346|Ga0070753_1113505Not Available1048Open in IMG/M
3300007346|Ga0070753_1294323Not Available581Open in IMG/M
3300007542|Ga0099846_1198148Not Available709Open in IMG/M
3300007640|Ga0070751_1104225All Organisms → Viruses → Predicted Viral1170Open in IMG/M
3300007725|Ga0102951_1224308Not Available533Open in IMG/M
3300007784|Ga0102955_1142857Not Available649Open in IMG/M
3300007960|Ga0099850_1147248Not Available949Open in IMG/M
3300009000|Ga0102960_1317105Not Available550Open in IMG/M
3300009001|Ga0102963_1159521Not Available907Open in IMG/M
3300009001|Ga0102963_1368536Not Available564Open in IMG/M
3300009071|Ga0115566_10274887Not Available1001Open in IMG/M
3300009426|Ga0115547_1163661Not Available708Open in IMG/M
3300009433|Ga0115545_1262560Not Available578Open in IMG/M
3300009496|Ga0115570_10213669Not Available866Open in IMG/M
3300010297|Ga0129345_1094633Not Available1110Open in IMG/M
3300010368|Ga0129324_10430184Not Available508Open in IMG/M
3300010389|Ga0136549_10019848Not Available4064Open in IMG/M
3300017950|Ga0181607_10603047Not Available577Open in IMG/M
3300017956|Ga0181580_10047613All Organisms → cellular organisms → Bacteria3257Open in IMG/M
3300017958|Ga0181582_10505724Not Available752Open in IMG/M
3300017963|Ga0180437_10181009Not Available1677Open in IMG/M
3300017967|Ga0181590_10247173Not Available1319Open in IMG/M
3300017967|Ga0181590_10505072Not Available841Open in IMG/M
3300017968|Ga0181587_10111793Not Available1955Open in IMG/M
3300017987|Ga0180431_10704326Not Available683Open in IMG/M
3300017987|Ga0180431_10941158Not Available571Open in IMG/M
3300017989|Ga0180432_10226782Not Available1472Open in IMG/M
3300017989|Ga0180432_10461344Not Available931Open in IMG/M
3300017989|Ga0180432_10611662Not Available776Open in IMG/M
3300017989|Ga0180432_10701777Not Available710Open in IMG/M
3300017991|Ga0180434_10587765Not Available850Open in IMG/M
3300018065|Ga0180430_10499090Not Available835Open in IMG/M
3300018420|Ga0181563_10271567Not Available1002Open in IMG/M
3300018420|Ga0181563_10495703Not Available687Open in IMG/M
3300021335|Ga0213867_1007581Not Available4627Open in IMG/M
3300021373|Ga0213865_10160137Not Available1146Open in IMG/M
3300021957|Ga0222717_10112149Not Available1696Open in IMG/M
3300021957|Ga0222717_10324087Not Available873Open in IMG/M
3300021958|Ga0222718_10105581Not Available1653Open in IMG/M
3300021958|Ga0222718_10109416Not Available1615Open in IMG/M
3300021958|Ga0222718_10142345Not Available1363Open in IMG/M
3300021958|Ga0222718_10378938Not Available712Open in IMG/M
3300021960|Ga0222715_10012273Not Available6737Open in IMG/M
3300021960|Ga0222715_10041555Not Available3231Open in IMG/M
3300021960|Ga0222715_10548603Not Available605Open in IMG/M
3300021964|Ga0222719_10031945Not Available4127Open in IMG/M
3300021964|Ga0222719_10543848Not Available687Open in IMG/M
3300022057|Ga0212025_1011559Not Available1328Open in IMG/M
3300022065|Ga0212024_1025367Not Available987Open in IMG/M
3300022071|Ga0212028_1004169Not Available1963Open in IMG/M
3300022071|Ga0212028_1081777Not Available604Open in IMG/M
3300022183|Ga0196891_1002496Not Available3945Open in IMG/M
3300022183|Ga0196891_1036913Not Available908Open in IMG/M
3300022187|Ga0196899_1080863Not Available994Open in IMG/M
3300022308|Ga0224504_10468550Not Available526Open in IMG/M
3300023116|Ga0255751_10042071Not Available3217Open in IMG/M
3300023176|Ga0255772_10004079All Organisms → Viruses13837Open in IMG/M
3300023176|Ga0255772_10325348Not Available804Open in IMG/M
3300024262|Ga0210003_1013817All Organisms → Viruses5295Open in IMG/M
3300024262|Ga0210003_1036723Not Available2658Open in IMG/M
3300024433|Ga0209986_10006785Not Available9217Open in IMG/M
3300024433|Ga0209986_10496637Not Available538Open in IMG/M
3300025543|Ga0208303_1030654Not Available1433Open in IMG/M
3300025626|Ga0209716_1008564Not Available4973Open in IMG/M
3300025630|Ga0208004_1079152Not Available816Open in IMG/M
3300025647|Ga0208160_1039654Not Available1387Open in IMG/M
3300025653|Ga0208428_1007984Not Available3805Open in IMG/M
3300025671|Ga0208898_1015914Not Available3517Open in IMG/M
3300025695|Ga0209653_1124541Not Available794Open in IMG/M
3300025759|Ga0208899_1009947Not Available5360Open in IMG/M
3300025759|Ga0208899_1049578Not Available1806Open in IMG/M
3300025769|Ga0208767_1019145Not Available3868Open in IMG/M
3300025853|Ga0208645_1008928All Organisms → Viruses6331Open in IMG/M
3300025889|Ga0208644_1113369Not Available1308Open in IMG/M
3300025889|Ga0208644_1399547Not Available506Open in IMG/M
3300026097|Ga0209953_1021937Not Available1105Open in IMG/M
3300026125|Ga0209962_1055104Not Available662Open in IMG/M
3300026187|Ga0209929_1087743Not Available823Open in IMG/M
3300027917|Ga0209536_102250963Not Available648Open in IMG/M
(restricted) 3300027996|Ga0233413_10062061Not Available1459Open in IMG/M
3300031578|Ga0307376_10015134All Organisms → Viruses6259Open in IMG/M
3300031578|Ga0307376_10055959Not Available2856Open in IMG/M
3300032277|Ga0316202_10110205All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium1275Open in IMG/M
3300034374|Ga0348335_144220Not Available662Open in IMG/M
3300034374|Ga0348335_155517Not Available618Open in IMG/M
3300034375|Ga0348336_042716All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Winogradskyella → unclassified Winogradskyella → Winogradskyella sp.1962Open in IMG/M
3300034418|Ga0348337_029719All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Winogradskyella → unclassified Winogradskyella → Winogradskyella sp.2536Open in IMG/M
3300034418|Ga0348337_101721Not Available934Open in IMG/M

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).



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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
AqueousEnvironmental → Aquatic → Marine → Coastal → Unclassified → Aqueous35.92%
Salt MarshEnvironmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh10.68%
Estuarine WaterEnvironmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water10.68%
Hypersaline Lake SedimentEnvironmental → Aquatic → Non-Marine Saline And Alkaline → Hypersaline → Sediment → Hypersaline Lake Sediment8.74%
Pelagic MarineEnvironmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine4.85%
Pond WaterEnvironmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Pond Water4.85%
Deep SubsurfaceEnvironmental → Aquatic → Marine → Oceanic → Sediment → Deep Subsurface3.88%
SeawaterEnvironmental → Aquatic → Marine → Coastal → Unclassified → Seawater1.94%
Freshwater To Marine Saline GradientEnvironmental → Aquatic → Marine → Coastal → Unclassified → Freshwater To Marine Saline Gradient1.94%
WaterEnvironmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Water1.94%
SoilEnvironmental → Terrestrial → Soil → Clay → Unclassified → Soil1.94%
MarineEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Marine0.97%
Marine SedimentEnvironmental → Aquatic → Marine → Oceanic → Sediment → Marine Sediment0.97%
SeawaterEnvironmental → Aquatic → Marine → Inlet → Unclassified → Seawater0.97%
Microbial MatEnvironmental → Aquatic → Marine → Coastal → Sediment → Microbial Mat0.97%
MarineEnvironmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine0.97%
Pelagic MarineEnvironmental → Aquatic → Marine → Neritic Zone → Unclassified → Pelagic Marine0.97%
MarineEnvironmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine0.97%
SedimentEnvironmental → Aquatic → Marine → Sediment → Unclassified → Sediment0.97%
Saline Water And SedimentEnvironmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water And Sediment0.97%
Saline Water And SedimentEnvironmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Epilimnion → Saline Water And Sediment0.97%
Marine Methane Seep SedimentEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Marine Methane Seep Sediment0.97%
SoilEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Soil0.97%
Macroalgal SurfaceHost-Associated → Algae → Green Algae → Ectosymbionts → Unclassified → Macroalgal Surface0.97%

Visualization
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Associated Samples

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Taxon OIDSample NameHabitat TypeIMG/M Link
3300000116Marine microbial communities from Delaware Coast, sample from Delaware MO Spring March 2010EnvironmentalOpen in IMG/M
3300000949Macroalgal surface ecosystem from Botany Bay, Sydney, Australia - BBAY94Host-AssociatedOpen in IMG/M
3300004097Pelagic marine sediment microbial communities from the LTER site Helgoland, North Sea, for post-phytoplankton bloom and carbon turnover studies - OSD3 (Helgoland) metaGEnvironmentalOpen in IMG/M
3300005512Saline surface water microbial communities from Etoliko Lagoon, Greece - halocline_waterEnvironmentalOpen in IMG/M
3300005611Saline surface water microbial communities from Etoliko Lagoon, GreeceEnvironmentalOpen in IMG/M
3300006025Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_22_D_<0.8_DNAEnvironmentalOpen in IMG/M
3300006637Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Fall_15_>0.8_DNAEnvironmentalOpen in IMG/M
3300006734Marine viral communities from the Gulf of Mexico - 31_GoM_OMZ_CsCl metaGEnvironmentalOpen in IMG/M
3300006802Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_18EnvironmentalOpen in IMG/M
3300006867Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_22_N_<0.8_DNAEnvironmentalOpen in IMG/M
3300006869Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_22_N_>0.8_DNAEnvironmentalOpen in IMG/M
3300006874Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_22_D_>0.8_DNAEnvironmentalOpen in IMG/M
3300007234Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Fall_15_<0.8_DNAEnvironmentalOpen in IMG/M
3300007346Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Aug_31EnvironmentalOpen in IMG/M
3300007542Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1504_1 Viral MetaGEnvironmentalOpen in IMG/M
3300007640Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Aug_28EnvironmentalOpen in IMG/M
3300007725Water microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG R2A_B_H2O_MGEnvironmentalOpen in IMG/M
3300007784Salt pond soil microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG SF2_A_D1_MGEnvironmentalOpen in IMG/M
3300007960Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1D Viral MetaGEnvironmentalOpen in IMG/M
3300009000Salt pond water microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG SF2_B_H2O_MGEnvironmentalOpen in IMG/M
3300009001Salt pond water microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG SF2_C_H2O_MGEnvironmentalOpen in IMG/M
3300009071Pelagic marine microbial communities from North Sea - COGITO_mtgs_120405EnvironmentalOpen in IMG/M
3300009426Pelagic marine microbial communities from North Sea - COGITO_mtgs_100420EnvironmentalOpen in IMG/M
3300009433Pelagic marine microbial communities from North Sea - COGITO_mtgs_100330EnvironmentalOpen in IMG/M
3300009496Pelagic marine microbial communities from North Sea - COGITO_mtgs_120524EnvironmentalOpen in IMG/M
3300010297Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_20_0.8_DNAEnvironmentalOpen in IMG/M
3300010368Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Spr_15_0.2_DNAEnvironmentalOpen in IMG/M
3300010389Marine sediment microbial communities from methane seeps within Baltimore Canyon, US Atlantic Margin - Baltimore Canyon MUC-11 12-14 cmbsfEnvironmentalOpen in IMG/M
3300017950Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 041413US metaG (megahit assembly)EnvironmentalOpen in IMG/M
3300017956Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071403BT metaG (megahit assembly)EnvironmentalOpen in IMG/M
3300017958Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071405AT metaG (megahit assembly)EnvironmentalOpen in IMG/M
3300017963Hypersaline lake sediment archaeal communities from the Salton Sea, California, USA - SS_3_D_1 metaGEnvironmentalOpen in IMG/M
3300017967Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071411BT metaG (megahit assembly)EnvironmentalOpen in IMG/M
3300017968Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071409AT metaG (megahit assembly)EnvironmentalOpen in IMG/M
3300017987Hypersaline lake sediment archaeal communities from the Salton Sea, California, USA - SS_1_MS_1 metaGEnvironmentalOpen in IMG/M
3300017989Hypersaline lake sediment archaeal communities from the Salton Sea, California, USA - SS_1_MS_2 metaGEnvironmentalOpen in IMG/M
3300017991Hypersaline lake sediment archaeal communities from the Salton Sea, California, USA - SS_1_D_2 metaGEnvironmentalOpen in IMG/M
3300018065Hypersaline lake sediment archaeal communities from the Salton Sea, California, USA - SS_1_S_2 metaGEnvironmentalOpen in IMG/M
3300018420Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 011512CT metaG (megahit assembly)EnvironmentalOpen in IMG/M
3300021335Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO540EnvironmentalOpen in IMG/M
3300021373Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO282EnvironmentalOpen in IMG/M
3300021957Estuarine water microbial communities from San Francisco Bay, California, United States - C33_18DEnvironmentalOpen in IMG/M
3300021958Estuarine water microbial communities from San Francisco Bay, California, United States - C33_27DEnvironmentalOpen in IMG/M
3300021960Estuarine water microbial communities from San Francisco Bay, California, United States - C33_9DEnvironmentalOpen in IMG/M
3300021964Estuarine water microbial communities from San Francisco Bay, California, United States - C33_34DEnvironmentalOpen in IMG/M
3300022057Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Aug_28 (v2)EnvironmentalOpen in IMG/M
3300022065Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_24 (v2)EnvironmentalOpen in IMG/M
3300022071Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Sep_01 (v2)EnvironmentalOpen in IMG/M
3300022183Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_24 (v3)EnvironmentalOpen in IMG/M
3300022187Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Sep_01 (v3)EnvironmentalOpen in IMG/M
3300022308Sediment microbial communities from San Francisco Bay, California, United States - SF_Oct11_sed_USGS_24EnvironmentalOpen in IMG/M
3300023116Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071412BT metaGEnvironmentalOpen in IMG/M
3300023176Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071411BT metaGEnvironmentalOpen in IMG/M
3300024262Deep subsurface microbial communities from Baltic Sea to uncover new lineages of life (NeLLi) - Landsort_02402 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300024433Deep subsurface microbial communities from Black Sea to uncover new lineages of life (NeLLi) - Black_00105 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025543Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1504_2 Viral MetaG (SPAdes)EnvironmentalOpen in IMG/M
3300025626Pelagic marine microbial communities from North Sea - COGITO_mtgs_120531 (SPAdes)EnvironmentalOpen in IMG/M
3300025630Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Fall_15_>0.8_DNA (SPAdes)EnvironmentalOpen in IMG/M
3300025647Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1504_1 Viral MetaG (SPAdes)EnvironmentalOpen in IMG/M
3300025653Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_29_N_>0.8_DNA (SPAdes)EnvironmentalOpen in IMG/M
3300025671Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_4 (SPAdes)EnvironmentalOpen in IMG/M
3300025695Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - ESP_116LU_22_DNA (SPAdes)EnvironmentalOpen in IMG/M
3300025759Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_24 (SPAdes)EnvironmentalOpen in IMG/M
3300025769Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_21 (SPAdes)EnvironmentalOpen in IMG/M
3300025853Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Sep_01 (SPAdes)EnvironmentalOpen in IMG/M
3300025889Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_18 (SPAdes)EnvironmentalOpen in IMG/M
3300026097Salt pond water microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG R2_restored_H2O_MG (SPAdes)EnvironmentalOpen in IMG/M
3300026125Water microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG R2A_C_H2O_MG (SPAdes)EnvironmentalOpen in IMG/M
3300026187Salt pond water microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG SF2_C_H2O_MG (SPAdes)EnvironmentalOpen in IMG/M
3300027917Marine sediment microbial communities from White Oak River estuary, North Carolina - WOR-2-8_12 (SPAdes)EnvironmentalOpen in IMG/M
3300027996 (restricted)Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Na_anoxic_6_MGEnvironmentalOpen in IMG/M
3300031578Soil microbial communities from Risofladan, Vaasa, Finland - TR-2EnvironmentalOpen in IMG/M
3300032277Microbial mat bacterial communities from mineral coupon in-situ incubated in ocean water Damariscotta River, Maine, United States - 3-month pyrrhotiteEnvironmentalOpen in IMG/M
3300034374Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Aug_31 (v4)EnvironmentalOpen in IMG/M
3300034375Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Aug_30 (v4)EnvironmentalOpen in IMG/M
3300034418Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Aug_28 (v4)EnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID Sample Taxon ID Habitat Sequence
DelMOSpr2010_1002554023300000116MarineMGVAVDLKKKEFIGQGFSKKEARTKAXEWCEQTNTCRGCSQVVRLDWWSWXXGYCKDCID
BBAY94_1018163413300000949Macroalgal SurfaceMGLVVDKKKEEFIGQGFSKKEARIKAHEWCEQTNTCRGCSKVVRLDWWSWKQGYCKDCID
Ga0055584_10133235313300004097Pelagic MarineMGVAFNLKKEEFIGQNFSKKEARIKAHEWCATTNTCRGCSQVVRPSWWSWKQGYCKDCID
Ga0074648_115577423300005512Saline Water And SedimentMGVLVDLKKEEFIGQGFSKKEAKIKAHEWCATTNTCRGCSQVVQPNWWSWKQGYCKDCID
Ga0074647_1003167123300005611Saline Water And SedimentMGVAVDLKKEEFIGQGFSKKEARIKAHEWCEQTNTCRGCSQVVRLDWWSWKQGYCKDCID
Ga0075474_1002573343300006025AqueousMGTLVDLKKEEFIGQGFSKKEARTKAHEWCATTNTCRGCSQVVRPGWWSWKQGYCKDCMD
Ga0075461_1010732233300006637AqueousMGILVDLKKEEFIGQGFSKKEARTKAHEWCATTNTCRGCSQVVRPGWWSWKQGY
Ga0098073_102224023300006734MarineMGILVEQKKEEFIGQGFSKKEARTKAHEWCRQTNTCRGCSQVVRPGWWSWKQGYCKDCMG
Ga0070749_1073987723300006802AqueousMGILVEQKKEEFIGQGFSKKEARTKAHEWCATTNTCRGCSQVVRPGWWSWKQGYCRDCMD
Ga0075476_1007335453300006867AqueousMGLVVDQKKEEFIGQGFSKKEARTKAHEWCEQTNTCRGCSQVVRLDWW
Ga0075476_1013440743300006867AqueousMGVAVDLKKEEFIGQGFSKKEARTKAHEWCATTNTCRGCSQVVRPGWWSWKQGYCKDCMD
Ga0075477_1035893933300006869AqueousMGLVVDQKKEEFIGQGFSKKEARTKAHEWCQQTNTCRGCSQVVRPGWWSWKQGYCKDCID
Ga0075475_1009904343300006874AqueousMGVAVDLKKEEFIGQGFSKKEARTKAHEWCEQTNTCRGCSQVVRLDWW
Ga0075475_1032161333300006874AqueousMGVAVDLKKEEFIGQGFSKKEARTKAHEWCATTNTCRGCSQVVRPGWWSWKQGYCK
Ga0075460_1023966133300007234AqueousMGVAVDLKKQEFIGQGFSKKEARTKAHEWCATTNTCRGCSQVVRPGWWSWKQ
Ga0070753_111350543300007346AqueousMGVAVDLKKEEFIGQGFSKKEARTKALEWCQQTNTCRGCSQVVRPGWWSWKQGYCKDCID
Ga0070753_129432313300007346AqueousMGVLVDLKKEEFIGQGFSKKEARTKAHEWCATTNTCRGCSQVVRPGWWSWKQGYC
Ga0099846_119814823300007542AqueousMGILVEQKKEEFIGQGFSKKEALTKAHEWCEQTNTCRGCSKVVRLDWWSWKQGYCKDCID
Ga0070751_110422513300007640AqueousMGVAVDLKKEEFIGQGFSKKEALTKAHEWCQQTNTCRGCSQVVRLDWWSWKHGYCKDCID
Ga0102951_122430823300007725WaterMGVAVDLKKEQFIGQGFSKKEARIKAHEWCQQTNTCRGCSQVVRPQWWSWKQGYCKDCIG
Ga0102955_114285733300007784SoilMGLVVNKKKEEFIGQGFSKKEAKIKAHEWCATTNTCRGCSTVVRSDWWSWKRGYCKDCME
Ga0099850_114724813300007960AqueousMETIIMGTLVDLKKEEFIGQGFSKKEARTKALEWCQQTNTCRGCSQAVKPDEWSK
Ga0102960_131710513300009000Pond WaterMGVAVDLKKEEFIGQGFSKKEALTKAHEWCRQTNTCRGCSQVVRLDWWSWKQGYCKDCIG
Ga0102963_115952113300009001Pond WaterMGVAVDLKKEQFIGQGFSKKEARIKAHEWCATTNTCRGCSQVVQPSWWSWKQGYCKDCID
Ga0102963_136853623300009001Pond WaterDLKKEEFIGQGFSKKEARIKAHEWCEQTNTCRGCSQVVRLDWWSWKQGYCKDCID*
Ga0115566_1027488713300009071Pelagic MarineMGVLVEQKKKEFISQGFPKKEATTKAHEWCKQTNTCRGCSQVVQLDWWSWKRGYCKDCID
Ga0115547_116366143300009426Pelagic MarineMGLVVDQKKEEFIGQGFSKKEARIKAHEWCEQTNTCRGCSKVVRLDWWSWK
Ga0115545_126256033300009433Pelagic MarineMGVAVDLKKEEFIGQGFTKKEARIKAHEWCETTNTCRGCSSVVQSQWWSWKRGYCKDCID
Ga0115570_1021366913300009496Pelagic MarineIMGVAVDLKKEEFIGQGFSKKEARTKAHEWCQQTNTCRGCSQVVQLDWWSWKHGYCKDCID*
Ga0129345_109463313300010297Freshwater To Marine Saline GradientMGILVDLKKEEFIGQGFSKKEALTKAHEWCATTNTCRGCSQVVRPGWWSWKQGYC
Ga0129324_1043018423300010368Freshwater To Marine Saline GradientMETIIMGTLVDLKKEEFIGQGFSKKEARTKAHEWCATTNTCRGCSQVVRPGWWSWKQGYCKDCMD*
Ga0136549_1001984833300010389Marine Methane Seep SedimentVDLKKEEFIGQGFSKKEALTKAHEWCQQTNTCRGCSQVVRLDWWSWKQGYCKDCIG*
Ga0181607_1060304733300017950Salt MarshMGILVEQKKEEFIGQGFSKKEAKIKAHEWCATTNTCRGCSQVVRLDWWSWK
Ga0181580_1004761333300017956Salt MarshMGILVEQKKEEFIGQGFSKKEARTKAHEWCEQTNTCRGCSQVVRLDWWSWKQGYCKDCID
Ga0181582_1050572423300017958Salt MarshMGVAVDLKKKEFIGQGFSKKEARTKAHEWCEQTNTCRGCSQVVRLDWWSWKQGYCKDCID
Ga0180437_1018100913300017963Hypersaline Lake SedimentMGILVDLKKEEFIGQGFSKKEARIKAHEWCATTNTCRGCSQVVRPGWWSWKQGYCKDCID
Ga0181590_1024717313300017967Salt MarshMGILVEQKKEEFIGQGFSKKEARTKAHEWCEQTNTCRGCSQVVRLDWWSWKQGYCKDCIG
Ga0181590_1050507233300017967Salt MarshMGTLVDLKKEEFIGQGFSKKEARTKAHEWCEQTNTCRGCSQVVRLDWWSWKQGYC
Ga0181587_1011179323300017968Salt MarshMGVAVDLKKKEFIGQGFSKKEARTKAHEWCEQTNTCRGCSQVVRLDWWSWKQGYCKDCIG
Ga0180431_1070432623300017987Hypersaline Lake SedimentMGVAVDLKKEEFIGQGFSKKEALTKAHEWCATTNTCRGCSQVVRLDWWSWKQGYCKDCID
Ga0180431_1094115813300017987Hypersaline Lake SedimentMGVLVDLKKEEFIGQGFSKKEALTKAHEWCATTNTCRGCSQVVRPGWWSW
Ga0180432_1022678213300017989Hypersaline Lake SedimentMGVAVDLKKEEFIGQGFSKKEALTKAHEWCATTNTCRGCSTVVRSDWWSWKRGYCRDCME
Ga0180432_1046134423300017989Hypersaline Lake SedimentMGVAVDLKKEEFIGQGFSKKEALTKAHEWCATTNTCRGCSQVVQPSWWSWKQGYCKDCID
Ga0180432_1061166213300017989Hypersaline Lake SedimentLQSIRFTISRGCSIMGVAVDLKKEEFIGQGFSKKEALTKAHEWCATTNTCRGCSQVVRPGWWSWKQGYCKDCID
Ga0180432_1070177713300017989Hypersaline Lake SedimentEFIGQGFSKKEALTKAHEWCATTNTCRGCSQVVRPGWWSWKQGYCKDCID
Ga0180434_1058776523300017991Hypersaline Lake SedimentMGVAVDLKKEEFIGQGFSKKEALTKAHEWCATTNTCRGCSQVVRPSWWSWKQGYCKDCID
Ga0180430_1049909023300018065Hypersaline Lake SedimentMGVAVDLKKEEFIGQGFSKKEALTKAHEWCQQTNTCRGCSQVVRPGWWSWKQGYCKDCID
Ga0181563_1027156733300018420Salt MarshMGTVVEQKIQQFVSEGLPKKEARQKAHEYCENTNTCRGCSQTISLDWWSWKQGYCKDCMG
Ga0181563_1049570333300018420Salt MarshMGVAVDLKKKEFIGQGFSKKEARTKAHEWCEQTNTCRGCSQVVRLDWWSWKQGYC
Ga0213867_100758183300021335SeawaterMGVAVDLKKEEFIGQGFSKKEAKIKAHEWCATTNTCRGCSQVVQPSWWSWKQGYCKDCID
Ga0213865_1016013723300021373SeawaterMGVAVDLKKKEFIGQGFSKKEARTKAHEWCQQTNTCRGCSQVVRLDWWSWKQGYCKDCID
Ga0222717_1011214933300021957Estuarine WaterMGILVEQKKEEFIGQGFSKKEARTKAHEWCRQTNTCRGCSQVVRLDWWSWKQGYCKDCIG
Ga0222717_1032408713300021957Estuarine WaterMGLVVNKKKEEFIGQGFSKKEARIKAHEWCEQTNTCRGCSKVVRLDWWSWKQGYCKD
Ga0222718_1010558123300021958Estuarine WaterIRFTISRGCSIMGVAVDLKKEEFIGQGFSKKEALTKALEWCATTNTCRGCSQVVQPSWWSWKQGYCKDCID
Ga0222718_1010941623300021958Estuarine WaterMGVAVDLKKEEFIGQGFSKKEALTKAHEWCQQTNTCRGCSQVVRLDWWSWKQGYCKDCID
Ga0222718_1014234523300021958Estuarine WaterMGVAVDLKKEEFIGQGFSKKEARTKAHEWCQQTNTCRGCSQVVQLDWWSWKQGYCKDCID
Ga0222718_1037893813300021958Estuarine WaterMGVAVDLKKEQFIGQGFSKKEARIKALEWCQQTNTCRGCSQVVRPQWWSWKQGYCKDCID
Ga0222715_1001227343300021960Estuarine WaterMGLVVNKKKEEFIGQGFSKKEARIKAHEWCQQTNTCRGCSQVVRLDWWSWKQGYCKDCIG
Ga0222715_1004155543300021960Estuarine WaterEDYLIMGLVVNKKKEEFIGQGFSKKEARIKAHEWCEQTNTCRGCSKVVRLDWWSWKQGYCKDCID
Ga0222715_1054860333300021960Estuarine WaterMGVAVDLKKEEFIGQGFSKKEARTKAHEWCQQTNTCRGCSQVVQLDWWSWKQGYCKD
Ga0222719_1003194573300021964Estuarine WaterMGILVDLKKEEFIGQGFSKKEARTKAHEWCATTNTCRGCSQVVRPGWWSWKQGYCKDCMD
Ga0222719_1054384813300021964Estuarine WaterMGLVVDQKKEEFIGQGFSKKEARIKAHEWCEQTNTCRGCSKVVRLDWWSWKQGYCKD
Ga0212025_101155933300022057AqueousMGVAVDLKKEEFIGQGFSKKEAKIKAHEWCATTNTCRGCSQVVRPGWWSWKQGYCKDCID
Ga0212024_102536713300022065AqueousMGVAVDLKKEEFIGQGFSKKEAKIKAHEWCATTNTCRGCSQVVRPGWWSWKQGYC
Ga0212028_100416913300022071AqueousMGILVDLKKEEFIGQGFSKKEARTKAHEWCATTNTCRGCSQVVRPGWWS
Ga0212028_108177713300022071AqueousNTIPRGCSIMGVAVDLKKKEFIGQGFSKKEARTKAHEWCEQTNTCRGCSQVVRLDWWSWKQGYCKDCID
Ga0196891_100249643300022183AqueousMGLVVDQKKEEFIGQGFSKKEARIKAHEWCEQTNTCRGCSKVVRLDWWSWKQGYCKDCID
Ga0196891_103691343300022183AqueousMGVLVDLKKEEFIGQGFSKKEARTKAHEWCATTNTCRGCSQVVRPGWWSWKQGYCK
Ga0196899_108086313300022187AqueousMGVAVDLKKKEFIGQGFSKKEARTKAHEWCEQTNTCRGCSQVVRLDWWSW
Ga0224504_1046855013300022308SedimentMGLVVNKKKEEFIGQGFSKKEARIKAHEWCEQTNTCRGCSKVVRLDWWS
Ga0255751_1004207113300023116Salt MarshMGILVEQKKEEFIGQGFSKKEAKIKAHEWCATTNTCRGCSQVVRLDWWSWKQGYCKDCIG
Ga0255772_10004079243300023176Salt MarshMGVAVDLKKKEFIGQGFSKKEALTKAHEWCEQTNTCRGCSQVVRLDWWSWKQGYCKDCID
Ga0255772_1032534813300023176Salt MarshMGTLVDLKKEEFIGQGFSKKEARTKAHEWCEQTNTCRGCSQVVRLDWWSWKQGYCK
Ga0210003_101381763300024262Deep SubsurfaceMGVLVDLKKEEFIGQGFSKKEARTKAQEWCATTNTCRGCSQVVRPGWWSWKQGYCKDCID
Ga0210003_103672323300024262Deep SubsurfaceMGVIVNQKTEEFIGQGFSKKEARTKAHEWCATTNTCRGCSSVVRPDSWSWKQGYCRDCMD
Ga0209986_1000678543300024433Deep SubsurfaceMGILVDLKKEEFIGQGFSKKEARTKAQEWCATTNTCRGCSQVVRSGWWSWKQGYCKDCID
Ga0209986_1049663713300024433Deep SubsurfaceMGVLVDLKKEEFIGQGFSKKEARTKAQEWCATTNTCRGCSQVVRPGWWSWKQ
Ga0208303_103065433300025543AqueousMGILVEQKKEEFIGQGFSKKEALTKAHEWCEQTNTCRGCSQVVRLDWWSWKQGYCKDCID
Ga0209716_100856483300025626Pelagic MarineMGVAVDLKKEEFIGQGFSKKEARTKAHEWCQQTNTCRGCSQVVQLDWWSWKHGYCKDCID
Ga0208004_107915213300025630AqueousMGILVDLKKEEFIGQGFSKKEARTKAHEWCATTNTCRGCSQVVRPGWWSWKQG
Ga0208160_103965433300025647AqueousMGVLVDLKKEEFIGQGFSKKEAKIKAHEWCATTNTCRGCSQVVRPGWWSWK
Ga0208428_100798423300025653AqueousMGVAVDLKKEEFIGQGFSKKEALTKAHEWCATTNTCRGCSQVVRPGWWSWKQGYCKDCID
Ga0208898_101591463300025671AqueousMGVAVDLKKEEFIGQGFSKKEARTKAHEWCEQTNTCRGCSQVVRLDWWSWKQGYCKDCID
Ga0209653_112454113300025695MarineMGVAVDLKKEEFIGQGFSKKEARIKAHEWCATTNTCRGCSQVVQPSWWSWKQGYCKDCID
Ga0208899_100994713300025759AqueousMGVLVDLKKEEFIGRGFSKKEAKIKAHEWCATTNTCRGCSQVVRPSWWSWKQGYCKDCID
Ga0208899_104957843300025759AqueousMGVLVDLKKEEFIGQGFSKKEARTKAHEWCATTNTCRGCSQVVRPGWWSWKQGYCKDCMD
Ga0208767_101914593300025769AqueousMGVLVDLKKEEFIGQGFSKKEALTKAHEWCATTNTCRGCSQVVRPGWWSWKQGYCKDCMD
Ga0208645_1008928133300025853AqueousMGLVVDQKKEEFIGQGFSKKEARIKAHEWCEQTNTCRGCSQVVRLDWWSWKQGYCKDCID
Ga0208644_111336943300025889AqueousMGTLVDLKKEEFIGQGFSKKEARTKAHEWCATTNTCRGCSQVVRPGWW
Ga0208644_139954713300025889AqueousMGVAVDLKKQEFIGQGFSKKEARTKAHEWCATTNTCRGCSQVVRPGWWSWKQGYCK
Ga0209953_102193743300026097Pond WaterMGVAVDLKKEEFIGQGFSKKEARIKAHEWCATTNTCRGCSQVVQPGWWSWKQGYCKDCI
Ga0209962_105510433300026125WaterMGVAVDLKKEEFIGQGFSKKEARTKAHEWCQQTNTCRGCSQVVRLDWWSWKQGYCKDCIG
Ga0209929_108774313300026187Pond WaterMGVAVDLKKEQFIGQGFSKKEARIKAHEWCATTNTCRGCSQVVQPSWWSWK
Ga0209536_10225096313300027917Marine SedimentMGVAVDLKKEEFIGQGFSKKEAKIKAHEWCATTNTCRGCSQVVRPGWWSWKQ
(restricted) Ga0233413_1006206113300027996SeawaterMGVAVDLKKEEFIGQGFSKKEARTKAHEWCQQTNTCRGCSQVVQLDWWSRKQGYCKDCID
Ga0307376_1001513443300031578SoilMGILVDLKKEEFIGQGFSKKEARTKAQEWCATTNTCRGCSQVVRPGWWSWKQGYCKDCID
Ga0307376_1005595943300031578SoilMGILVEQKTEEFIGQGFSKKEARTKAHEWCATTNTCRGCSSVVRPDSWSWKQGYCRDCMD
Ga0316202_1011020523300032277Microbial MatMGVAVDLKKEEFIGLGFSKKEARTKAHEWCQQTNTCRGCSQVVQLDWWSWKHGYCKDCID
Ga0348335_144220_517_6603300034374AqueousMGVLVDLKKEEFIGQGFSKKEARTKAHEWCATTNTCRGCSQVVRPGWW
Ga0348335_155517_440_6163300034374AqueousMGVAVDLKKEEFIGQGFSKKEARTKAHEWCATTNTCRGCSQVVRPGWWSWKQGYCKDCM
Ga0348336_042716_1814_19603300034375AqueousMGILVEQKKEEFIGQGFSKKEARTKAHEWCQQTNTCRGCSQVVRLDWWS
Ga0348337_029719_1847_20293300034418AqueousMGILVEQKKEEFIGQGFSKKEARTKAHEWCQQTNTCRGCSQVVRPGWWSWKQGYCKDCID
Ga0348337_101721_1_1623300034418AqueousMGVLVDLKKEEFIGQGFSKKEARTKAHEWCATTNTCRGCSQVVRPGWWSWKQGY


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