NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334931_000041

Scaffold Ga0334931_000041


Overview

Basic Information
Taxon OID3300034377 Open in IMG/M
Scaffold IDGa0334931_000041 Open in IMG/M
Source Dataset NameSub-biocrust soil microbial communities from Mojave Desert, California, United States - 27HNS
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)115507
Total Scaffold Genes105 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)75 (71.43%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Desert → Sub-Biocrust Soil → Soil And Biocrust Microbial Communities From Mojave Desert, California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)34.7856Long. (o)-115.66Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F044992Metagenome153Y
F069865Metagenome123Y

Sequences

Protein IDFamilyRBSSequence
Ga0334931_000041_113345_113551F044992GGGGGMNREVGSYDEDNRGTARFEGDDVGLPESPIYSNFSKNLWRTHARHGLVQSPNRSRENSDGPMPARDES
Ga0334931_000041_33814_33996F069865AGGMWDRKRQLIWLGVGLLFGTFSLYPLARDDAGRTDWQYFLQLEALLVLVICVMFYVYGRKR

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