Scaffold Ga0348335_000018

Overview

Basic Information

• Taxon OID: 3300034374
• Scaffold ID: Ga0348335_000018
• Source Dataset Name: Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Aug_31 (v4)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 240421
• Total Scaffold Genes: 246
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 179 (72.76%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Delaware Bay
• Coordinates
  • Lat. (^o): 39.124826
  • Long. (^o): -75.260873

Associated Families

Family	Category	Number of Sequences	3D Structure?
F023480	Metagenome / Metatranscriptome	210	Y
F080078	Metagenome / Metatranscriptome	115	Y
F096901	Metagenome / Metatranscriptome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0348335_000018_38217_38354	F096901	GGA	VIDSAEPKLTQYETFETAMSCHIEQAVLEADFTQEEIAFCEDPNE
Ga0348335_000018_51494_51673	F080078	N/A	MKDMCIQAHRLRNQYSEQVEETYNYAQVKDILEQVQSMAAGIANEKITEIKTEMDEWKK
Ga0348335_000018_89638_90441	F023480	N/A	MYQNVPKDILLSEFSNLIIPFDKNWNKIGVNLSGGADSALLTFLLCTIIDTNELDTKIDIITYQRCWETRPWQGYIAHQVYTWLANRFPNIIQERHLCYIPPELEHGVIGPIVDGRSGDQIIVGSYNKFAAWQYNLDAVYNATSKNPDDLREDRMTNRDKDAEDGNITDLWMQSKKAESIFVHPFRFVKKDWIVAQYYIFNIGDLYRLTRSCEGDINHHDNVKEACSHFKDYKEGMTIPICTQCWWCEERAWAERKVVETIKEINEF