Scaffold Ga0335064_0069963

Overview

Basic Information

• Taxon OID: 3300034357
• Scaffold ID: Ga0335064_0069963
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME12May2017-rr0187
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2036
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009808	Metagenome	312	N
F052594	Metagenome / Metatranscriptome	142	N
F099306	Metagenome / Metatranscriptome	103	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0335064_0069963_1637_1813	F099306	N/A	MIQEKVIRKRLNNLEKIYIAESIKDKNRQDKWFIGIIEHRMKQEKTKLTLLKIGTHGC
Ga0335064_0069963_1803_2036	F052594	GGA	MAAKNYGLDKKQIALCDAMIAKYPKGIKTNNVVSSASTLVSFYNSKDERNKQFYQYMNPERMVSLLWQVVKINNEKED
Ga0335064_0069963_305_1204	F009808	N/A	MKKQFNNQNFEWLFQDITSLMPKIIFTGIILTYLITAALNVYFLPLPLLLSIPASLMLQFGRFAVVFIDFLNPSEKRSKYPPRVAAIATVIALLELWFSIQGQTTGAEFWAMFFFIGAIICFGYVLEIQFIEKGIEAYGIGVKEPRTRRRVVRETTKTNISTTQPIKFTMAVCFILTVAYLPAQNNHFFAYNTMSLEKIGNKQLERCYYSEADDSYTVDTITYDMLSGINLWDGYSRTTYDNTMFMTYGTQNFEYYPVAGLWKYKNKYYDYYHLLKFVSKYVKRNFLNKKINYGKIRRH