Metagenome / Metatranscriptome Family F099306

Basic Information
Family ID	F099306
Family Type	Metagenome / Metatranscriptome
Number of Sequences	103
Average Sequence Length	57 residues
Representative Sequence	MIQEKVIRKRLNNLEKIYIAESLKDKNRQDKWFMGIIEQRMKQEKTKLSLLKIGTHGC
Number of Associated Samples	83
Number of Associated Scaffolds	103

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	0.00 %
% of genes near scaffold ends (potentially truncated)	21.36 %
% of genes from short scaffolds (< 2000 bps)	82.52 %
Associated GOLD sequencing projects	78
AlphaFold2 3D model prediction	No

Hidden Markov Model
Column number x ScaleMaximum Observed Maximum Theoretical Color SchemeDefault Consensus Colors CoordinatesModel Alignment

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Most Common Taxonomy
Group	Bacteria (38.835 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater (19.417 % of family members)
Environment Ontology (ENVO)	Unclassified (63.107 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Water (non-saline) (55.340 % of family members)

Multiple Sequence Alignments

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Full Alignment
Alignment of all the sequences in the family.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62. 1B570J29579_1013953 2B570J29581_1021531 3B570J40625_1004744233 4Ga0068872_101702572 5Ga0049080_100119223 6Ga0079957_13358271 7Ga0073922_10230942 8Ga0075470_100670863 9Ga0075470_102017732 10Ga0070744_100104736 11Ga0070744_100409243 12Ga0075473_103479232 13Ga0102856_10431912 14Ga0105747_13494122 15Ga0114351_100539131 16Ga0114363_100248419 17Ga0114363_10799812 18Ga0104242_10115792 19Ga0104242_10511382 20Ga0102829_13172381 21Ga0114973_104128312 22Ga0114973_106777402 23Ga0114973_106777482 24Ga0105090_106673452 25Ga0105103_102450922 26Ga0105091_100490672 27Ga0114980_105641712 28Ga0114968_104272302 29Ga0114975_102317143 30Ga0114975_106105571 31Ga0114974_105016882 32Ga0129333_117601071 33Ga0129336_107366771 34Ga0139557_10215711 35Ga0153698_136217 36Ga0153799_10037766 37Ga0157498_10125012 38Ga0164293_100790423 39Ga0164293_102993133 40Ga0164293_109565522 41Ga0164292_107918422 42Ga0164294_102526903 43Ga0164295_111525621 44Ga0170791_119904023 45Ga0177922_100617522 46Ga0177922_106281942 47Ga0181364_10049104 48Ga0181365_10633123 49Ga0181358_12121791 50Ga0181349_11573523 51Ga0181346_11548672 52Ga0181359_10111634 53Ga0181359_10533344 54Ga0181359_11298272 55Ga0181359_11437642 56Ga0207193_18004442 57Ga0208721_10202363 58Ga0207939_10390312 59Ga0208722_10178613 60Ga0208222_10578662 61Ga0222714_103490782 62Ga0181354_11652053 63Ga0244777_105514452 64Ga0244775_100874783 65Ga0244775_105923573 66Ga0244775_108605202 67Ga0208005_10003316 68Ga0208923_10850252 69Ga0208974_10697802 70Ga0209077_11030233 71Ga0209392_12425772 72Ga0209297_11220383 73Ga0209087_12100073 74Ga0209596_12103312 75Ga0209088_100390332 76Ga0209134_101276942 77Ga0209354_102214211 78Ga0209354_102932661 79Ga0209253_103044052 80Ga0209400_100071828 81Ga0209191_12377873 82Ga0209191_13577401 83Ga0315291_100224884 84Ga0315907_107934492 85Ga0315900_107569101 86Ga0315909_104395031 87Ga0315909_108755781 88Ga0315297_109463343 89Ga0315292_109675083 90Ga0334980_0091976_588_764 91Ga0334981_0383690_320_496 92Ga0334994_0446861_237_413 93Ga0334979_0048422_1268_1444 94Ga0335002_0628667_34_210 95Ga0335010_0028715_4093_4245 96Ga0335010_0149010_2_151 97Ga0335022_0386511_605_760 98Ga0335027_0113163_1551_1727 99Ga0335027_0733697_1_171 100Ga0335055_0381055_3_155 101Ga0335054_0513853_34_210 102Ga0335061_0559910_137_313 103Ga0335064_0069963_1637_1813
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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62. 1B570J29579_1013953 2Ga0102829_13172381 3Ga0114975_102317143 4Ga0181349_11573523 5Ga0315292_109675083
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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62. 1B570J29579_1013953 2Ga0102829_13172381 3Ga0114975_102317143 4Ga0181349_11573523 5Ga0315292_109675083
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Neighboring Clusters of Orthologous Genes (COGs)

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 89.66% β-sheet: 0.00% Coil/Unstructured: 10.34%
Feature Viewer
Position : 0 Zoom : x 1 + Add Multiple Variants Enter the variants Position Original Variant Get Predictions Get Predictions Enter the variants Position Original Variant A / Ala R / Arg N / Asn D / Asp C / Cys E / Glu Q / Gln G / Gly H / His I / Ile L / Leu K / Lys M / Met F / Phe P / Pro S / Ser T / Thr W / Trp Y / Tyr V / Val
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Pfam ID	Name	% Frequency in 103 Family Scaffolds
PF01520	Amidase_3	20.39
PF05105	Phage_holin_4_1	3.88
PF00149	Metallophos	0.97
PF13392	HNH_3	0.97
PF04586	Peptidase_S78	0.97
PF00692	dUTPase	0.97
PF06199	Phage_tail_2	0.97

COG ID	Name	Functional Category	% Frequency in 103 Family Scaffolds
COG0860	N-acetylmuramoyl-L-alanine amidase	Cell wall/membrane/envelope biogenesis [M]	20.39
COG4824	Phage-related holin (Lysis protein)	Mobilome: prophages, transposons [X]	3.88
COG0717	dCTP deaminase	Nucleotide transport and metabolism [F]	0.97
COG0756	dUTP pyrophosphatase (dUTPase)	Defense mechanisms [V]	0.97
COG3740	Phage head maturation protease	Mobilome: prophages, transposons [X]	0.97

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	77.67 %
Unclassified	root	N/A	22.33 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	38.83 %
Unclassified	root	N/A	22.33 %
Viruses	superkingdom	All Organisms → Viruses	38.83 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	38.83 %
Duplodnaviria	clade	All Organisms → Viruses → Duplodnaviria	37.86 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.97 %
Unclassified	root	N/A	22.33 %

Name	Rank	Taxonomy	Distribution
Heunggongvirae	kingdom	All Organisms → Viruses → Duplodnaviria → Heunggongvirae	37.86 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.97 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	37.86 %
Unclassified	root	N/A	22.33 %

Name	Rank	Taxonomy	Distribution
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	37.86 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.97 %
Unclassified	root	N/A	22.33 %
Uroviricota	phylum	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota	37.86 %

Name	Rank	Taxonomy	Distribution
Caudoviricetes	class	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	37.86 %
Epsilonproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Epsilonproteobacteria	37.86 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.97 %
Unclassified	root	N/A	22.33 %

Name	Rank	Taxonomy	Distribution
Campylobacterales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Epsilonproteobacteria → Campylobacterales	37.86 %
environmental samples	no rank	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples	37.86 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.97 %
Unclassified	root	N/A	22.33 %

Name	Rank	Taxonomy	Distribution
Campylobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Epsilonproteobacteria → Campylobacterales → Campylobacteraceae	37.86 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.97 %
Unclassified	root	N/A	22.33 %
uncultured Caudovirales phage	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	37.86 %

Name	Rank	Taxonomy	Distribution
Campylobacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Epsilonproteobacteria → Campylobacterales → Campylobacteraceae → Campylobacter	37.86 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.97 %
Unclassified	root	N/A	22.33 %
uncultured Caudovirales phage	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	37.86 %

Name	Rank	Taxonomy	Distribution
Campylobacter coli	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Epsilonproteobacteria → Campylobacterales → Campylobacteraceae → Campylobacter → Campylobacter coli	37.86 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.97 %
Unclassified	root	N/A	22.33 %
uncultured Caudovirales phage	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	37.86 %

Visualization
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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300002272\|B570J29579_101395	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Epsilonproteobacteria → Campylobacterales → Campylobacteraceae → Campylobacter → Campylobacter coli	1313	Open in IMG/M
3300002274\|B570J29581_102153	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1293	Open in IMG/M
3300002835\|B570J40625_100474423	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1185	Open in IMG/M
3300005528\|Ga0068872_10170257	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1258	Open in IMG/M
3300005582\|Ga0049080_10011922	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	3016	Open in IMG/M
3300005805\|Ga0079957_1335827	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Epsilonproteobacteria → Campylobacterales → Campylobacteraceae → Campylobacter → Campylobacter coli	668	Open in IMG/M
3300005955\|Ga0073922_1023094	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Epsilonproteobacteria → Campylobacterales → Campylobacteraceae → Campylobacter → Campylobacter coli	750	Open in IMG/M
3300006030\|Ga0075470_10067086	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1091	Open in IMG/M
3300006030\|Ga0075470_10201773	Not Available	569	Open in IMG/M
3300006484\|Ga0070744_10010473	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	2752	Open in IMG/M

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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	99.03%
Terrestrial	Environmental → Terrestrial	0.97%

Habitat	Taxonomy	Distribution
Freshwater	Environmental → Aquatic → Freshwater	82.52%
Marine	Environmental → Aquatic → Marine	16.50%
Soil	Environmental → Terrestrial → Soil	0.97%

Habitat	Taxonomy	Distribution
Coastal	Environmental → Aquatic → Marine → Coastal	6.80%
Ice	Environmental → Aquatic → Freshwater → Ice	0.97%
Intertidal Zone	Environmental → Aquatic → Marine → Intertidal Zone	3.88%
Lake	Environmental → Aquatic → Freshwater → Lake	48.54%
Lentic	Environmental → Aquatic → Freshwater → Lentic	23.30%
Lotic	Environmental → Aquatic → Freshwater → Lotic	0.97%
Sand	Environmental → Terrestrial → Soil → Sand	0.97%
Sediment	Environmental → Aquatic → Freshwater → Sediment	4.85%
Unclassified	Environmental → Aquatic → Marine → Unclassified	5.83%
Unclassified	Environmental → Aquatic → Freshwater → Unclassified	3.88%

Habitat	Taxonomy	Distribution
Epilimnion	Environmental → Aquatic → Freshwater → Lentic → Epilimnion	3.88%
Estuary	Environmental → Aquatic → Marine → Intertidal Zone → Estuary	3.88%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment	3.88%
Sediment	Environmental → Aquatic → Freshwater → Lentic → Sediment	0.97%
Unclassified	Environmental → Aquatic → Freshwater → Lake → Unclassified	44.66%
Unclassified	Environmental → Aquatic → Freshwater → Lentic → Unclassified	18.45%
Unclassified	Environmental → Aquatic → Marine → Coastal → Unclassified	6.80%
Unclassified	Environmental → Aquatic → Marine → Unclassified → Unclassified	5.83%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	4.85%
Unclassified	Environmental → Aquatic → Freshwater → Unclassified → Unclassified	3.88%
Unclassified	Environmental → Aquatic → Freshwater → Lotic → Unclassified	0.97%
Unclassified	Environmental → Aquatic → Freshwater → Ice → Unclassified	0.97%
Unclassified	Environmental → Terrestrial → Soil → Sand → Unclassified	0.97%

Habitat	Taxonomy	Distribution
Aqueous	Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous	3.88%
Estuarine	Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine	4.85%
Estuarine	Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine	3.88%
Estuarine Water	Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water	0.97%
Estuary Water	Environmental → Aquatic → Marine → Coastal → Unclassified → Estuary Water	0.97%
Freshwater	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater	19.42%
Freshwater	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater	5.83%
Freshwater	Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater	3.88%
Freshwater	Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater	3.88%
Freshwater	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater	2.91%
Freshwater	Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater	0.97%
Freshwater	Environmental → Aquatic → Freshwater → Ice → Unclassified → Freshwater	0.97%
Freshwater Lake	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake	14.56%
Freshwater Lake	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake	13.59%
Freshwater Lake Sediment	Environmental → Aquatic → Freshwater → Lentic → Sediment → Freshwater Lake Sediment	0.97%
Freshwater Lake Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment → Freshwater Lake Sediment	0.97%
Freshwater Lentic	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic	1.94%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment	4.85%
Freshwater To Marine Saline Gradient	Environmental → Aquatic → Marine → Coastal → Unclassified → Freshwater To Marine Saline Gradient	1.94%
Freshwater, Plankton	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton	2.91%
Freshwater, Surface Ice	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Surface Ice	0.97%
Lake	Environmental → Aquatic → Freshwater → Lake → Unclassified → Lake	0.97%
Sand	Environmental → Terrestrial → Soil → Sand → Unclassified → Sand	0.97%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment	2.91%

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300002272	Freshwater microbial communities from Lake Mendota, WI - 27JUL2010 deep hole epilimnion ns	Environmental	Open in IMG/M
3300002274	Freshwater microbial communities from Lake Mendota, WI - 12OCT2012 deep hole epilimnion	Environmental	Open in IMG/M
3300002835	Freshwater microbial communities from Lake Mendota, WI - (Lake Mendota Combined Ray assembly, ASSEMBLY_DATE=20140605)	Environmental	Open in IMG/M
3300005528	Freshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel1S_2200h metaG	Environmental	Open in IMG/M
3300005582	Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER15MSRF	Environmental	Open in IMG/M
3300005805	Microbial and algae communities from Cheney Reservoir in Wichita, Kansas, USA	Environmental	Open in IMG/M
3300005955	Groundwater microbial communities from the Columbia River, Washington, USA, for microbe roles in carbon and contaminant biogeochemistry - GW-RW metaG T2_23-Sept-14	Environmental	Open in IMG/M
3300006030	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_0.19_D_<0.8_DNA	Environmental	Open in IMG/M
3300006484	Estuarine microbial communities from the Columbia River estuary, USA - metaG S.535	Environmental	Open in IMG/M
3300006875	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_0.19_N_>0.8_DNA	Environmental	Open in IMG/M

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Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
B570J29579_1013953	3300002272	Freshwater	MIQEKVXRKRLNNLEQIYIAESMKDRRKQDKWFMGIIEQRMKQEKTKLTLLKIGTHGC*
B570J29581_1021531	3300002274	Freshwater	RKRLNNLEQIYIAESMKDRRKQDKWFMGIIEQRMKQEKTKLTLLKIGTHGC*
B570J40625_1004744233	3300002835	Freshwater	MIQEKVIRKRLNNLEKIYIAESLKDKNKQDKWFMGIIEHRMKQEKTKLSLLKIGTHGC*
Ga0068872_101702572	3300005528	Freshwater Lake	MIQEKVIRKRIHNLQQIYFAESMKDRRHQDKWFMGIIEQRMKQEKTKLSLLKIGTNGN*
Ga0049080_100119223	3300005582	Freshwater Lentic	MIQEKVIRKRIHNLQQIYFTESMKHRRHQDKWFMGIIEQRMKQEKTKLSLLKIGTNGN*
Ga0079957_13358271	3300005805	Lake	MIQEKVIRKRLNNLEQIYIAESMKDRRKQDKWFMGIIEQRMKQEKTKLTLLK
Ga0073922_10230942	3300005955	Sand	MIQEKVIRKRLNNLEKIYIAESLKDKNRQDKWFMGIIEHRMKQEKTKLSLLKIGTHGC*
Ga0075470_100670863	3300006030	Aqueous	MIQEKVIRKRLHNLQQIYFAESMKDRRHQDKWFMGIIEQRMKQEKTKLSLLKIGTNGN*
Ga0075470_102017732	3300006030	Aqueous	MIQEKVIRKRLHNLQQIYFTESMKDRRHQDKWFMGIIEQRMKQEKTKLSLLKIGTNGN*
Ga0070744_100104736	3300006484	Estuarine	MIQEKVIRKRLNNLEKIYIAESLKDKNRQDKWFMGIIEQRMKQEKTKLSLLKIGTHGC*
Ga0070744_100409243	3300006484	Estuarine	MMQEKVIRKRLNNLEKIYIAESMKHRNRQDKWFMGIIEQRIKQEKTKLTLLKIGTHGN*
Ga0075473_103479232	3300006875	Aqueous	MIQEKVIRKRIHNLQQIYFAESMKNRRHQDKWFMGIIEQRMKQEKTKLSLLKIGTNGN*
Ga0102856_10431912	3300007636	Estuarine	MIQEKVIRKRLNNLEKIYIAESIKDKNRQNKWFMDIIVQRIKQEKTKLTLLKIGTHGC*
Ga0105747_13494122	3300007974	Estuary Water	MIQEKVIRKRLNNLIKIYIAESLKDKNRQDKWFMGIIEHRMKQEKTKLSLLKIGTHGC*
Ga0114351_100539131	3300008117	Freshwater, Plankton	MIQEKVIRKRLNNLEQIYIAESMKDRRKQDKWFMGIIEQRMKQEKTKLTLLKIGTHGC*
Ga0114363_100248419	3300008266	Freshwater, Plankton	MIQEKVIRKRLNNLEKIYIAESLKDKNRQNKWFMDIIIQRIKQEKTKLKLLKIGTHGC*
Ga0114363_10799812	3300008266	Freshwater, Plankton	MIQEKVIRKRLHNLQQIYFAESMKDCRHQDKWFMGIIEQRMKQEKTKLSLLKIGTNGN*
Ga0104242_10115792	3300008962	Freshwater	MIQEKVIRKRLHNLQQIYFAESMKDLRHQDKWFMGIIEQRMKQEKTKLSLLKIGTNGN*
Ga0104242_10511382	3300008962	Freshwater	MIQEKVIRKRLNNLEKIYISESLKDKNRQNKWFMDIIVQRMKQEKTKLTLLKIGTHGC*
Ga0102829_13172381	3300009026	Estuarine	RLNNLEKIYIAESMKHRNRQDKWFMGIIEQRIKQEKTKLTLLKIGTHGN*
Ga0114973_104128312	3300009068	Freshwater Lake	MMQEKVIRKRLNNLEQIYFAETMKYHRNQDKWFLGIIEQRMKQEKTKLTLLKIGQHGN*
Ga0114973_106777402	3300009068	Freshwater Lake	MMQEKVLRKRLYNLEKIYFAETMKENRNQDKWFLGIIEQRIRQEKTKLTLLKIGQHGN*
Ga0114973_106777482	3300009068	Freshwater Lake	MMQEKVLRKRLHNLEKIYFAETMKENRNQDKWFLGIIEQRMRQEKTKLTLLKIGQHGN*
Ga0105090_106673452	3300009075	Freshwater Sediment	MIQEKVIRKRLNNLEKIYIAESLKDKNKQDKWFMGIIEHRMKQEKTKLTLLKIGTHGC*
Ga0105103_102450922	3300009085	Freshwater Sediment	MIQEKVIRKRLNNLEQIYIAESMKDRRKQDKWFMGIIEHRMKQEKTKLTLLKIGTHGC*
Ga0105091_100490672	3300009146	Freshwater Sediment	MIQEKVIRKRLNNLEQIYIAESMKDRRKQDKWFMGIIEQRMKQEKTKLSLLKIGTHGC*
Ga0114980_105641712	3300009152	Freshwater Lake	MIQEKVLRKRLHNLEKIYFAETMKENRKQDKWFLGIIEQRIRQEKTKLTLLKIGQHGN*
Ga0114968_104272302	3300009155	Freshwater Lake	MMQEKVLRKRLQNLEKIYFAETMKENRNQDKWFLGIIEQRIKQEKTKLTLLKIGQHGN*
Ga0114975_102317143	3300009164	Freshwater Lake	MMQEKVLRKRLYNLEKIYFAETMKENRNQDKWFLGIIEQRIRQEKTKLNLLKIGQHGN*
Ga0114975_106105571	3300009164	Freshwater Lake	KRLDNLEKIYFAETMKENRNQDKWFLGIIEQRIRQEKTKLTLLKIGQHGN*
Ga0114974_105016882	3300009183	Freshwater Lake	MMQEKVLRKRLHNLEKIYFAETMKENRNQDKWFLGIIEQRMRQEKTKLTLLKIGQYGN*
Ga0129333_117601071	3300010354	Freshwater To Marine Saline Gradient	RLHNLQQIYFTESMKDRRHQDKWFMGIIEQRMKQEKTKLSLLKIGTNGN*
Ga0129336_107366771	3300010370	Freshwater To Marine Saline Gradient	SLFQMIQEKVIRKRLHNLQQIYFAESMKDRRHQDKWFMSIIEQRMKQEKTKLSLLKIGTNGN*
Ga0139557_10215711	3300011010	Freshwater	MIQEKVIRKRLNNLEKIYIAESLKDKNRQDKWFMGIIEHRMKQEKTKLSLLKIGTHG
Ga0153698_136217	3300011335	Freshwater	MIQEKVIRKRIHNLQQIYFAESMKNRRHQDKWFMGIIEQRMKQEKTKLSLLKIGTNCN*
Ga0153799_10037766	3300012012	Freshwater	MIQEKVIRKRLNNLEKIYIAESLKDKNRQNKWFMDIIVQRIKQEKTKLTLLKIGTHGC*
Ga0157498_10125012	3300012666	Freshwater, Surface Ice	MIQEKVIRKRLNNLEKIYISESLKDKNRQDKWFMGIIEHRIKQEKTKISLIKIGTHGC*
Ga0164293_100790423	3300013004	Freshwater	MIQEKVIRKRLNNLEQIYIAESMKDRRKQDKWFMGIIEHRMKQEKTKLSLLKIGTHGC*
Ga0164293_102993133	3300013004	Freshwater	MIQEKVIRKRLNNLEKIYIAESIKDKNRQDKWFMGIIEHRMKQEKTKLTLLKIGTHGC*
Ga0164293_109565522	3300013004	Freshwater	MIQEKVIRKRLNNLEKIYIAESIKDKNRQDKWFMGIIEQRMKQEKTKLSLLKIGTHGC*
Ga0164292_107918422	3300013005	Freshwater	MIQEKVIRKRLNNLEKIYIAESLKDKNKQDKWFMGIIEHRIKQEKTKLSLLKIGTHGC*
Ga0164294_102526903	3300013006	Freshwater	MMQEKVLRKRLYNLEKIYFAETMKENRKQDKWFLGIIEQRIRQEKTKLTLLKIGQHGN*
Ga0164295_111525621	3300013014	Freshwater	MMQEKVLRKRLHNLEKIYFAETMKENRKQDKWFLGIIEQRIRQEKTKLTLLKIGQHGN*
Ga0170791_119904023	3300013295	Freshwater	MMQEKVLRKRLHNLQKIYFAETMKENRNQDKWFLGIIEQRMRQEKTKLTLLKIGQHGN*
Ga0177922_100617522	3300013372	Freshwater	MIQEKVIRKRLNNLEKIYISESLKDKNRQDKWFMGIIEHRMKQEKTKLSLLKIGTHGC*
Ga0177922_106281942	3300013372	Freshwater	MIQEKVIRKRLNNLEKIYIAESLKDKNRQDKWFMGIIEHRIKQEKTKISLIKIGTHGC*
Ga0181364_10049104	3300017701	Freshwater Lake	MIQEKVIRKRINNLEKIYIFESLKDKNRQNKWFMDIIVQRIKQEKTKLTLLKIGTHGC
Ga0181365_10633123	3300017736	Freshwater Lake	MIQEKVIRKRLNNLEKIYIAESLKDKNKQDKWFMGIIEHRIKQEKIKLSLLKIGTHGC
Ga0181358_12121791	3300017774	Freshwater Lake	MIQEKVIRKRLNNLEKIYISESLKDKNRQNKWFMDIIVQRMKQEKTKLKLLKIGTHGC
Ga0181349_11573523	3300017778	Freshwater Lake	MIQEKVIRKRLNNLEKIYIAESLKDKNRQDKWFMGIIEHRIKQEKTKLSLL
Ga0181346_11548672	3300017780	Freshwater Lake	MIQEKVIRKRLNNLEKIYISESLKDKNKQDKWFMGIIEHRIKQEKTKLSLLKIGTHGC
Ga0181359_10111634	3300019784	Freshwater Lake	MIQEKVIIKRLNNLEKIYIAESLKDKNRQDKWFMGIIEHRMKQEKTKLSLLKIGTHGC
Ga0181359_10533344	3300019784	Freshwater Lake	MIQEKVIRKRLNNLEKIYIAESLKDKNKQDKLFMGIIEHRIKQEKTKLSLLKIGTHGC
Ga0181359_11298272	3300019784	Freshwater Lake	MIQEKVIRKRINNLEKIYIAESLKDKNRQNKWFMDIIVQRIKQEKTKLTLLKIGTHGC
Ga0181359_11437642	3300019784	Freshwater Lake	MIQEKVIRKRLNNLEKIYIAESLKDKNRQDKWFMGIIEHRIKQEKTKLSLLKIGTHGC
Ga0207193_18004442	3300020048	Freshwater Lake Sediment	MIQEKVIRKRLNNLEKIYIAESLKDKNRQDKWFMGIIEHRMKQEKTKLTLLKIGTHGC
Ga0208721_10202363	3300020518	Freshwater	MIQEKVIRKRLNNLEQIYIAESMKDRRKQDKWFMGIIEQRMKQEKTKLTLLKIGIHGC
Ga0207939_10390312	3300020536	Freshwater	MIQEKVIRKRLNNLEQIYIAESMKDRRKQDKWFMGIIEHRMKQEKTKLTLLKKGTHGC
Ga0208722_10178613	3300020537	Freshwater	FQMIQEKVIRKRLNNLEQIYIAESMKDRRKQDKWFMGIIEQRMKQEKTKLSLLKIGTHGS
Ga0208222_10578662	3300020566	Freshwater	MIQEKVIRKRLNNLEQIYIAESMKDQRKQDKWFMGIIEQRMKQEKTKLTLLKIGTHGC
Ga0222714_103490782	3300021961	Estuarine Water	MIQEKVIRKRLHNLQQIYFAESMKDRRHQDKWFMGIIEQRMKQEKTKLSLLKIGTNGN
Ga0181354_11652053	3300022190	Freshwater Lake	MIQEKVIRKRLNNLEKIYIAESLKDKNRQNKWFMDIIVQRIKQEKTKLTLLKIGTHGC
Ga0244777_105514452	3300024343	Estuarine	MIQEKVIRKRLNNLEKIYIAESIKDKNRQNKWFMDIIVQRIKQEKTKLTLLKIGTHGC
Ga0244775_100874783	3300024346	Estuarine	MMQEKVIRKRLNNLEKIYIAESMKHRNRQDKWFMGIIEQRIKQEKTKLTLLKIGTHGN
Ga0244775_105923573	3300024346	Estuarine	MIQEKVIRKRLNNLEKIYIAESLKDKNRQDKWFMGIIEQRMKQEKTKLSLLKIGTHGC
Ga0244775_108605202	3300024346	Estuarine	MMQEKVIRKRLSNLEQIYFAETMKDNRNQDKWFLGIIEQRMKQEKTKLTLLKIGQHGN
Ga0208005_10003316	3300025848	Aqueous	MIQEKVIRKRLHNLQQIYFTESMKDRRHQDKWFMGIIEQRMKQEKTKLSLLKIGTNGN
Ga0208923_10850252	3300027320	Estuarine	IFQMIQEKVIRKRLNNLEKIYIAESLKDKNRQDKWFMGIIEQRMKQEKTKLSLLKIGTHG
Ga0208974_10697802	3300027608	Freshwater Lentic	MIQEKVIRKRIHNLQQIYFTESMKHRRHQDKWFMGIIEQRMKQEKTKLSLLKIGTNGN
Ga0209077_11030233	3300027675	Freshwater Sediment	MIQEKVIRKRLNNLEQIYIAESMKDRRKQDKWFMGIIEHRMKQEKTKLSLLKIGTHGC
Ga0209392_12425772	3300027683	Freshwater Sediment	MIQEKVIRKRLNNLEQIYIAESMKDRRKQDKWFMGIIEQRMKQEKTKLTLLKIGTHGC
Ga0209297_11220383	3300027733	Freshwater Lake	MMQEKVLRKRLHNLEKIYFAETMKENRNQDKWFLGIIEQRIRQEKTKLTLLKIGQHGN
Ga0209087_12100073	3300027734	Freshwater Lake	MMQEKVLRKRLHNLEKIYFAETMKENRNQDKWFLGIIEQRMRQEKTKLTLLKIGQHGN
Ga0209596_12103312	3300027754	Freshwater Lake	MMQEKVLRKRLHNLQKIYFAETMKENRNQDKWFLGIIEQRMRQEKTKLTLLKIGQHGN
Ga0209088_100390332	3300027763	Freshwater Lake	MIQEKVLRKRLHNLEKIYFAETMKENRKQDKWFLGIIEQRIRQEKTKLTLLKIGQHGN
Ga0209134_101276942	3300027764	Freshwater Lake	MIQEKVIRKRLNNLEKIYIAESLKDKNRQNKCFMDIIVQRIKQEKTKLTLLKIGTHGC
Ga0209354_102214211	3300027808	Freshwater Lake	LNNLEKIYIAESLKDKNRQDKWFMGIIEHRMKQEKTKLSLLKIGTHGC
Ga0209354_102932661	3300027808	Freshwater Lake	QEKVIRKRLNNLEKIYIAESLKDKNRQNKWFMDIIVQRIKQEKTKLTLLKIGTHGC
Ga0209253_103044052	3300027900	Freshwater Lake Sediment	MIQEKVIRKRLNNLEKIYIAESLKDKNRQDKWFMGIIEQRIKQEKTKLSLLKIGTHGC
Ga0209400_100071828	3300027963	Freshwater Lake	MMQEKVLRKRLHNLEKIYFAETMKENRNQDKWFLGIIEQRMRQEKTKLTLLKIGQHGC
Ga0209191_12377873	3300027969	Freshwater Lake	MMQEKVLRKRLHNLEKIYFVETMKENRNQDKWFLGIIEQRIRQEKTKLTLLKIGQHGN
Ga0209191_13577401	3300027969	Freshwater Lake	LRKRLHNLEKIYFAETMKENRNQDKWFLGIIEQRMRQEKTKLNLLKIGQHGN
Ga0315291_100224884	3300031707	Sediment	MMQEKVIRKRLNNLEKIYIAESMKHHNRQNKWFMGIIEQRIKQEKTKLTLLKIGTHGN
Ga0315907_107934492	3300031758	Freshwater	MIQEKVIRKRLNNLEKIYIAESLKDKNRQNKWFMDIIIQRIKQEKTKLKLLKIGTHGC
Ga0315900_107569101	3300031787	Freshwater	MIQEKVIRKRIYNLQQIYFAESMKDRRHQDKWFMGIIEQRMKQEKTKLSLLKIGTNGN
Ga0315909_104395031	3300031857	Freshwater	MIQEKVIRKRIHNLQQIYFAESMKHRRHQDKWFMGIIEQRMKQEKTKLSLLKIGT
Ga0315909_108755781	3300031857	Freshwater	MIQEKVIRKRLHNLQQIYFAESMKDCRHQDKWFMGIIEQRMKQEKTKLSLLKIGTNGN
Ga0315297_109463343	3300031873	Sediment	MMQEKVIRKRLNNLEKIYIAESMKHHNRQNKWFMGIIEQRIKQEKTKLTLLKIGTHVN
Ga0315292_109675083	3300032143	Sediment	KSIFQMMQEKVIRKRLNNLEKIYIAESMKHHNRQNKWFMGIIEQRIKQEKTKLTLLKIGTHVN
Ga0334980_0091976_588_764	3300033816	Freshwater	MIQEKVIRKRLNNLEKIYIAELLKDKNKQDKWFMGIIEQRMKQEKTKLTLLKIGTHGC
Ga0334981_0383690_320_496	3300033980	Freshwater	MIQEKVIRKRLNNLEKIYIAESIKDKNRQDKWFMGIIEHRMKQEKTKLSLLKIGTHGC
Ga0334994_0446861_237_413	3300033993	Freshwater	MIQEKVIRKRLNNLEKIYIAESIKDKNRQDKWFMGIIEQRMKQEKTKLSLLKIGTHGC
Ga0334979_0048422_1268_1444	3300033996	Freshwater	MIQEKVIRKRLNNLEQIYIAESMKDRRKQDKWFMGIIVQRIKQEKTKLTLLKIGTHGC
Ga0335002_0628667_34_210	3300034020	Freshwater	MIQEKVIRKRLNNLEQIYIAESMKDRRKQDKWFMGIIEQRMKQEKTKLSLLKIGTHGC
Ga0335010_0028715_4093_4245	3300034092	Freshwater	KRLNNLEKIYIAESLKDKNKQDKWFMGIIEHRMKQEKTKLTLLKIGTHGC
Ga0335010_0149010_2_151	3300034092	Freshwater	MIQEKVIRKRLNNLEKIYIAESLKDKNKQDKWFMGIIEHRMKQEKTKLTL
Ga0335022_0386511_605_760	3300034095	Freshwater	MIQEKVIRKRLNNLEQIYIAESMKDRRKQDKWFMGIIEHRMKQEKTKLTLLK
Ga0335027_0113163_1551_1727	3300034101	Freshwater	MIQEKVIRKRLNNLEQIYIAESMKDRRKQDKWFMGIIEHRMKQEKTKLTLLKIGIHGC
Ga0335027_0733697_1_171	3300034101	Freshwater	QEKVIRKRLNNLEQIYIAESMKDRRKQDKWFMGIIEHRMKQEKTKLTLLKIGTHGC
Ga0335055_0381055_3_155	3300034110	Freshwater	MIQEKVIRKRLNNLEQIYIAESMKDRRKQDKWFMGIIEQRMKQEKTKLTLL
Ga0335054_0513853_34_210	3300034119	Freshwater	MIQEKVIRKRLNNLEKIFIAESLKDKNRQDKWFMGIIEHRMKQEKTKLSLLKIGTHGC
Ga0335061_0559910_137_313	3300034168	Freshwater	MIQEKIIRKRLNNLEKIYIAESLKDKNRQDKWFMGIIEHRIKQEKTKLSLLKIGTHGC
Ga0335064_0069963_1637_1813	3300034357	Freshwater	MIQEKVIRKRLNNLEKIYIAESIKDKNRQDKWFIGIIEHRMKQEKTKLTLLKIGTHGC

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F099306

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences