Scaffold Ga0335048_0088186

Overview

Basic Information

• Taxon OID: 3300034356
• Scaffold ID: Ga0335048_0088186
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME17Jun2014-rr0152
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1891
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (14.29%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F024535	Metagenome	205	Y
F037637	Metagenome	167	Y
F105026	Metagenome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0335048_0088186_141_410	F037637	N/A	MNGHGTKKRTKRVSVTFEWTVQTDLRLILDELKDLIGTGIETYHNQKKSVQIEDKYHEVEFRQEYVDVIHDSVEREINGELKLVIKSKI
Ga0335048_0088186_407_577	F105026	N/A	MKSQIKNAVNTYFPHRPNVVYLSRKWKTKICPEDKGGSFNEKLYLDYLDAILNFTK
Ga0335048_0088186_906_1190	F024535	GGA	MAKKKINIDTDNIDVNLEKDGTNVKIDIDTKNLDIQVVRDEINKEFNLDGKNIDIHVKKTPEGVEVKVDAKGVLWKAVAKRIVKFILKRFKVGK