Basic Information | |
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Taxon OID | 3300034356 Open in IMG/M |
Scaffold ID | Ga0335048_0088186 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME17Jun2014-rr0152 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 1891 |
Total Scaffold Genes | 7 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 1 (14.29%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (33.33%) |
Associated Families | 3 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Wisconsin | |||||||
Coordinates | Lat. (o) | 43.0995 | Long. (o) | -89.4045 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F024535 | Metagenome | 205 | Y |
F037637 | Metagenome | 167 | Y |
F105026 | Metagenome | 100 | N |
Protein ID | Family | RBS | Sequence |
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Ga0335048_0088186_141_410 | F037637 | N/A | MNGHGTKKRTKRVSVTFEWTVQTDLRLILDELKDLIGTGIETYHNQKKSVQIEDKYHEVEFRQEYVDVIHDSVEREINGELKLVIKSKI |
Ga0335048_0088186_407_577 | F105026 | N/A | MKSQIKNAVNTYFPHRPNVVYLSRKWKTKICPEDKGGSFNEKLYLDYLDAILNFTK |
Ga0335048_0088186_906_1190 | F024535 | GGA | MAKKKINIDTDNIDVNLEKDGTNVKIDIDTKNLDIQVVRDEINKEFNLDGKNIDIHVKKTPEGVEVKVDAKGVLWKAVAKRIVKFILKRFKVGK |
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