NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335048_0015167

Scaffold Ga0335048_0015167


Overview

Basic Information
Taxon OID3300034356 Open in IMG/M
Scaffold IDGa0335048_0015167 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME17Jun2014-rr0152
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5563
Total Scaffold Genes16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (25.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001775Metagenome / Metatranscriptome636Y
F024318Metagenome206Y
F030017Metagenome186Y

Sequences

Protein IDFamilyRBSSequence
Ga0335048_0015167_4033_4170F024318N/AMRNYLYLGKFIQRPGDLAPKGVASTFNEEKLPFNETFERLWNLMK
Ga0335048_0015167_4152_4484F030017N/AMEFDEITQQIKSLYLEGLTRKKIAKTLGLDDQKVGYLLYTKMKLHEIYPRKLMDENIFQILTDHQISRILTLATYGYCCREIAEDQNLEFRKVKKLLDVAEARNMIEKKV
Ga0335048_0015167_583_1131F001775GAGGMRKLLDDERIRIATIAFLIGLLLAFVVYPKPEQETVYKYETVTKTDTLIVEVKDTVYVPKKWIKSQIIRDTILIDYKPKISQFNASFPFEYGSTNVTGEVLGEVLKMTATSDFKIPVVTNTITNTETKTIVEKPKGIYLGASVNSLLQPGAKVSYLDNKYLFSYQFQPLEKLHTVSVSKKLF
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