NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335013_0521747

Scaffold Ga0335013_0521747


Overview

Basic Information
Taxon OID3300034284 Open in IMG/M
Scaffold IDGa0335013_0521747 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME08Jul2016-rr0075
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)707
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003688Metagenome / Metatranscriptome473Y
F045545Metagenome / Metatranscriptome152Y
F070870Metagenome122Y

Sequences

Protein IDFamilyRBSSequence
Ga0335013_0521747_248_394F070870N/AMWSNNNKMKKKTKIIILIVLFFLTAVSLWTAANFKKISDLNLFNIEED
Ga0335013_0521747_370_501F045545GAGGMIKQIALFFICKIKSHNFVDAGSCPFTGKSYNGCLRCGATITK
Ga0335013_0521747_498_701F003688N/AVHSITPPKGFGVEILDNEHFLTVKLDERKFLHMVHDDKISALQYVVKLKKTLEKCGAIVLITREAIK
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