Scaffold Ga0335007_0000360

Overview

Basic Information

• Taxon OID: 3300034283
• Scaffold ID: Ga0335007_0000360
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME07Aug2003-rr0061
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 34438
• Total Scaffold Genes: 74
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 52 (70.27%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003688	Metagenome / Metatranscriptome	473	Y
F030765	Metagenome	184	Y
F084135	Metagenome / Metatranscriptome	112	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335007_0000360_10538_10978	F084135	N/A	MTNFQSQSKRSGDAFEELVYADLVSRGFLNIDRNYCFEDAGCEVDFRAHSDNGFEYVEAKGGVAGEGKRPGAQRTDNVKKAIANGALIKTYNTLYYVVYFSAKPEPGSYSDNMIKIALKNKIIDEVRYLEPKDNFKQYWLDFDKEF
Ga0335007_0000360_19039_19254	F003688	N/A	MRRAFHSVTPPKGFTIELIDNEHFLTIKLNELKFAKMVHDDKIQALQYVLNLKKALEMEGAIVLVTREAIK
Ga0335007_0000360_9597_9707	F030765	AGGA	MDTEEDFNLEDITNAIVNQAKAEVKSKFGNKKRHRQ