Scaffold Ga0334997_0039228

Overview

Basic Information

• Taxon OID: 3300034280
• Scaffold ID: Ga0334997_0039228
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME10Aug2009-rr0048
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3258
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (10.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F024535	Metagenome	205	Y
F033362	Metagenome	177	Y
F037637	Metagenome	167	Y
F104496	Metagenome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0334997_0039228_1324_1608	F024535	N/A	MAKKKITIDTDNLDVNLEKDGTSLKVDIDTKNVDIKIVRDEINKEFNLDSKNIDIHVEKTPDGVEVKVEAKGVLWKAIAKRIVKFILKRFKVGK
Ga0334997_0039228_2163_2414	F033362	N/A	MKMIPITQFIEVIKKQGAVGVLALWLAYTHFEVQDVKARLYNCLDKNEYYNRKPIEEKQPPLPSVKNDTVAVVENKSRKLAKK
Ga0334997_0039228_322_591	F037637	N/A	MNWQIKKKRTKQVTVTFEWTDKGDLIAILSDLSALISSGVETYHNQKKSILTADKWHEIKFSQKYVDKIHEEVESDINGELKLVIKSNL
Ga0334997_0039228_742_888	F104496	N/A	MKKQTGILINSIIILLGANYESYLLLAAGVLCLSLVLISKTKRNEVKN