Scaffold Ga0370495_0025657

Overview

Basic Information

• Taxon OID: 3300034257
• Scaffold ID: Ga0370495_0025657
• Source Dataset Name: Peat soil microbial communities from wetlands in Alaska, United States - Frozen_pond_02D_17
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1758
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (33.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Unclassified → Untreated Peat Soil → Peat Soil Microbial Communities From Wetland Fen In Alaska, United States

Source Dataset Sampling Location

• Location Name: USA: Alaska
• Coordinates
  • Lat. (^o): 64.9142
  • Long. (^o): -147.835
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019097	Metagenome / Metatranscriptome	231	Y
F034330	Metagenome / Metatranscriptome	175	Y
F035656	Metagenome / Metatranscriptome	171	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0370495_0025657_1405_1593	F035656	N/A	MFAPAGNGEVRIKTEDGLHALLWGASIPAERIEEAVAALRHDTEHEIPNVTLTLERLSKLGL
Ga0370495_0025657_473_619	F019097	N/A	MDFLQLAFMLGPLLGAAAGYLVDGGTGATSGFVIPMGPLVVAWLFGGR
Ga0370495_0025657_748_888	F034330	AGGTGG	MRAVETLTLVLVATVLFMWVVLAHPTPDEQARVYDSMGQSTGIAWR