Scaffold Ga0364931_0148296

Overview

Basic Information

• Taxon OID: 3300034176
• Scaffold ID: Ga0364931_0148296
• Source Dataset Name: Sediment microbial communities from East River floodplain, Colorado, United States - 21_j17
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 756
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Floodplain → Sediment → Unclassified → Sediment → Sediment Microbial Communities From Colorado River Basin Floodplains, Colorado, United States

Source Dataset Sampling Location

• Location Name: USA: Colorado
• Coordinates
  • Lat. (^o): 38.9229
  • Long. (^o): -106.9499

Associated Families

Family	Category	Number of Sequences	3D Structure?
F028264	Metagenome	192	Y
F066037	Metagenome	127	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0364931_0148296_213_467	F028264	N/A	MSETLERMQERARELARSGKFSGWRSVAFELQFEPGLKEVFQWLHSASVEDAFQWLHSPAAKEELDRLCDEARNPSSRHGPEAA
Ga0364931_0148296_3_182	F066037	GGAG	MAREILLGQLAQAEQHVAEGKAFIAKQQRLIVESERDGCRDTAETMRLLEAFLLLQRSRE