Metagenome Family F066037

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F066037
Family Type	Metagenome
Number of Sequences	127
Average Sequence Length	74 residues
Representative Sequence	MDREILLRQLVQAEQNVAEGKAFIAKQQRLIVESERDGCRDTAETMRLLEAFLLLQRSREEDRARILDELSE
Number of Associated Samples	106
Number of Associated Scaffolds	127

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	81.89 %
% of genes near scaffold ends (potentially truncated)	29.92 %
% of genes from short scaffolds (< 2000 bps)	87.40 %
Associated GOLD sequencing projects	99
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.76

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (61.417 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland (8.661 % of family members)
Environment Ontology (ENVO)	Unclassified (25.197 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (37.008 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 64.00% β-sheet: 0.00% Coil/Unstructured: 36.00%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.76
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.76
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Structural matches with SCOPe domains

SCOP family	SCOP domain	Representative PDB	TM-score
a.2.5.1: Prefoldin	d1fxka_	1fxk	0.88002
a.2.5.1: Prefoldin	d1fxkc_	1fxk	0.87296
a.7.4.1: Smac/diablo	d1g73a_	1g73	0.87144
a.24.27.1: MW0975(SA0943)-like	d2ap3a1	2ap3	0.87081
a.7.5.1: Tubulin chaperone cofactor A	d1qsda_	1qsd	0.86662

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 127 Family Scaffolds
PF01471	PG_binding_1	26.77
PF13374	TPR_10	2.36
PF13414	TPR_11	1.57
PF13424	TPR_12	1.57
PF00313	CSD	0.79
PF05532	CsbD	0.79
PF08240	ADH_N	0.79
PF00196	GerE	0.79
PF14559	TPR_19	0.79
PF04055	Radical_SAM	0.79
PF01050	MannoseP_isomer	0.79
PF17200	sCache_2	0.79
PF02133	Transp_cyt_pur	0.79
PF01741	MscL	0.79
PF06776	IalB	0.79

COG ID	Name	Functional Category	% Frequency in 127 Family Scaffolds
COG1970	Large-conductance mechanosensitive channel	Cell wall/membrane/envelope biogenesis [M]	0.79
COG3237	Uncharacterized conserved protein YjbJ, UPF0337 family	Function unknown [S]	0.79
COG5342	Invasion protein IalB, involved in pathogenesis	General function prediction only [R]	0.79

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	61.42 %
Unclassified	root	N/A	38.58 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	61.42 %
Unclassified	root	N/A	38.58 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	61.42 %
Unclassified	root	N/A	38.58 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	40.94 %
Unclassified	root	N/A	38.58 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.79 %
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	0.79 %
Bacteria incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis	0.79 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	38.58 %
Unclassified	root	N/A	38.58 %
Bacteria candidate phyla	clade	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	0.79 %
Planctomycetes	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes	0.79 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.79 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	38.58 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	37.01 %
Candidatus Rokubacteria	phylum	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	0.79 %
unclassified Planctomycetota	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota	0.79 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.79 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	38.58 %
unclassified Hyphomicrobiales	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales	28.35 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	3.94 %
unclassified Candidatus Rokubacteria	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria	0.79 %
Planctomycetota bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetota bacterium	0.79 %
Hyphomicrobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae	0.79 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.79 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	38.58 %
Hyphomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	28.35 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2.36 %
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	0.79 %
unclassified Hyphomicrobiaceae	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae	0.79 %
Planctomycetota bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetota bacterium	0.79 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.79 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	38.58 %
Hyphomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	28.35 %
unclassified Bradyrhizobium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium	1.57 %
Hyphomicrobiaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	0.79 %
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	0.79 %
Planctomycetota bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetota bacterium	0.79 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.79 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	38.58 %
Hyphomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	28.35 %
Bradyrhizobium sp. WSM2254	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. WSM2254	0.79 %
Bradyrhizobium sp. Ec3.3	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. Ec3.3	0.79 %
Hyphomicrobiaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	0.79 %
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	0.79 %
Planctomycetota bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetota bacterium	0.79 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.79 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000364\|INPhiseqgaiiFebDRAFT_105288453	Not Available	1345	Open in IMG/M
3300000789\|JGI1027J11758_12732231	All Organisms → cellular organisms → Bacteria	683	Open in IMG/M
3300000955\|JGI1027J12803_100863248	All Organisms → cellular organisms → Bacteria	2056	Open in IMG/M
3300001213\|JGIcombinedJ13530_102366495	Not Available	536	Open in IMG/M
3300002239\|JGI24034J26672_10120635	Not Available	507	Open in IMG/M
3300004058\|Ga0055498_10001120	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	2348	Open in IMG/M
3300004062\|Ga0055500_10006481	All Organisms → cellular organisms → Bacteria	1797	Open in IMG/M
3300004479\|Ga0062595_100010002	All Organisms → cellular organisms → Bacteria	3071	Open in IMG/M
3300005045\|Ga0071328_176751	All Organisms → cellular organisms → Bacteria → Terrabacteria group	2089	Open in IMG/M
3300005093\|Ga0062594_101755398	All Organisms → cellular organisms → Bacteria	651	Open in IMG/M
3300005164\|Ga0066815_10117133	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	514	Open in IMG/M
3300005331\|Ga0070670_100260283	All Organisms → cellular organisms → Bacteria	1512	Open in IMG/M
3300005332\|Ga0066388_102080657	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1021	Open in IMG/M
3300005340\|Ga0070689_100109543	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	2195	Open in IMG/M
3300005366\|Ga0070659_100634682	All Organisms → cellular organisms → Bacteria	920	Open in IMG/M
3300005434\|Ga0070709_10853349	All Organisms → cellular organisms → Bacteria	718	Open in IMG/M
3300005455\|Ga0070663_100798784	All Organisms → cellular organisms → Bacteria	809	Open in IMG/M
3300005456\|Ga0070678_101093677	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	736	Open in IMG/M
3300005458\|Ga0070681_11121212	All Organisms → cellular organisms → Bacteria	708	Open in IMG/M
3300005530\|Ga0070679_100606367	Not Available	1038	Open in IMG/M
3300005544\|Ga0070686_100222341	Not Available	1365	Open in IMG/M
3300005547\|Ga0070693_100140473	Not Available	1520	Open in IMG/M
3300005563\|Ga0068855_102417573	All Organisms → cellular organisms → Bacteria	524	Open in IMG/M
3300005578\|Ga0068854_101605264	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	593	Open in IMG/M
3300005713\|Ga0066905_101579069	Not Available	600	Open in IMG/M
3300005764\|Ga0066903_101338054	All Organisms → cellular organisms → Bacteria → Proteobacteria	1341	Open in IMG/M
3300005764\|Ga0066903_102298307	All Organisms → cellular organisms → Bacteria	1041	Open in IMG/M
3300005764\|Ga0066903_106553282	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. WSM2254	606	Open in IMG/M
3300005842\|Ga0068858_101609705	All Organisms → cellular organisms → Bacteria	641	Open in IMG/M
3300005843\|Ga0068860_100536753	All Organisms → cellular organisms → Bacteria	1171	Open in IMG/M
3300005937\|Ga0081455_10033533	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	4612	Open in IMG/M
3300005937\|Ga0081455_10048774	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	3656	Open in IMG/M
3300006173\|Ga0070716_101707935	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	519	Open in IMG/M
3300006175\|Ga0070712_101226027	Not Available	653	Open in IMG/M
3300006755\|Ga0079222_10122006	All Organisms → cellular organisms → Bacteria → Proteobacteria	1421	Open in IMG/M
3300006806\|Ga0079220_11553912	Not Available	571	Open in IMG/M
3300006844\|Ga0075428_101953711	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	609	Open in IMG/M
3300006854\|Ga0075425_102125989	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. Ec3.3	626	Open in IMG/M
3300006954\|Ga0079219_10314176	Not Available	980	Open in IMG/M
3300009011\|Ga0105251_10480203	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	579	Open in IMG/M
3300009078\|Ga0105106_10159103	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	1657	Open in IMG/M
3300009101\|Ga0105247_11829259	Not Available	506	Open in IMG/M
3300009148\|Ga0105243_12440502	All Organisms → cellular organisms → Bacteria	561	Open in IMG/M
3300009157\|Ga0105092_10520855	Not Available	683	Open in IMG/M
3300009166\|Ga0105100_10617008	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	665	Open in IMG/M
3300009168\|Ga0105104_10808662	Not Available	545	Open in IMG/M
3300009545\|Ga0105237_11752632	Not Available	628	Open in IMG/M
3300009551\|Ga0105238_10383521	Not Available	1397	Open in IMG/M
3300009810\|Ga0105088_1093843	Not Available	549	Open in IMG/M
3300009811\|Ga0105084_1068192	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	644	Open in IMG/M
3300009817\|Ga0105062_1009651	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	1502	Open in IMG/M
3300009836\|Ga0105068_1033130	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	908	Open in IMG/M
3300009837\|Ga0105058_1063896	Not Available	835	Open in IMG/M
3300009837\|Ga0105058_1064963	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	829	Open in IMG/M
3300010362\|Ga0126377_10753888	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	1029	Open in IMG/M
3300010371\|Ga0134125_10773248	Not Available	1057	Open in IMG/M
3300010371\|Ga0134125_11943090	Not Available	640	Open in IMG/M
3300010373\|Ga0134128_10699963	Not Available	1125	Open in IMG/M
3300010373\|Ga0134128_11839124	All Organisms → cellular organisms → Bacteria	666	Open in IMG/M
3300010396\|Ga0134126_10720157	Not Available	1133	Open in IMG/M
3300010397\|Ga0134124_11495121	All Organisms → cellular organisms → Bacteria	703	Open in IMG/M
3300010401\|Ga0134121_10912965	Not Available	854	Open in IMG/M
3300010401\|Ga0134121_11283517	Not Available	737	Open in IMG/M
3300012931\|Ga0153915_11212878	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	881	Open in IMG/M
3300012955\|Ga0164298_10385567	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	900	Open in IMG/M
3300012964\|Ga0153916_11275278	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	813	Open in IMG/M
3300012964\|Ga0153916_11674904	Not Available	710	Open in IMG/M
3300013102\|Ga0157371_11563092	Not Available	516	Open in IMG/M
3300013105\|Ga0157369_10618785	Not Available	1117	Open in IMG/M
3300013308\|Ga0157375_13258980	Not Available	541	Open in IMG/M
3300014255\|Ga0075320_1082589	Not Available	616	Open in IMG/M
3300015371\|Ga0132258_10683311	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2583	Open in IMG/M
3300015371\|Ga0132258_10850082	Not Available	2303	Open in IMG/M
3300015371\|Ga0132258_13308023	Not Available	1109	Open in IMG/M
3300015372\|Ga0132256_103123973	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	557	Open in IMG/M
3300015373\|Ga0132257_100085628	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	3597	Open in IMG/M
3300015373\|Ga0132257_102005156	Not Available	746	Open in IMG/M
3300015374\|Ga0132255_100034599	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	6438	Open in IMG/M
3300015374\|Ga0132255_100382794	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2044	Open in IMG/M
3300015374\|Ga0132255_100826475	Not Available	1382	Open in IMG/M
3300015374\|Ga0132255_102725604	Not Available	756	Open in IMG/M
3300017792\|Ga0163161_10961371	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	727	Open in IMG/M
3300017939\|Ga0187775_10134689	All Organisms → cellular organisms → Bacteria	865	Open in IMG/M
3300017944\|Ga0187786_10229618	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	723	Open in IMG/M
3300017947\|Ga0187785_10003027	All Organisms → cellular organisms → Bacteria	5493	Open in IMG/M
3300017947\|Ga0187785_10519320	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	597	Open in IMG/M
3300017966\|Ga0187776_10257769	All Organisms → cellular organisms → Bacteria	1118	Open in IMG/M
3300017966\|Ga0187776_11122513	Not Available	585	Open in IMG/M
3300017966\|Ga0187776_11499016	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	518	Open in IMG/M
3300017993\|Ga0187823_10075068	Not Available	971	Open in IMG/M
3300018029\|Ga0187787_10039510	All Organisms → cellular organisms → Bacteria	1352	Open in IMG/M
3300018032\|Ga0187788_10008502	Not Available	3153	Open in IMG/M
3300018032\|Ga0187788_10125272	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	949	Open in IMG/M
3300018032\|Ga0187788_10221550	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	740	Open in IMG/M
3300018422\|Ga0190265_12468512	Not Available	619	Open in IMG/M
3300025160\|Ga0209109_10098823	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	1507	Open in IMG/M
3300025289\|Ga0209002_10475018	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	696	Open in IMG/M
3300025313\|Ga0209431_10858809	Not Available	654	Open in IMG/M
3300025327\|Ga0209751_10991930	Not Available	636	Open in IMG/M
3300025905\|Ga0207685_10419549	Not Available	690	Open in IMG/M
3300025905\|Ga0207685_10869368	Not Available	500	Open in IMG/M
3300025915\|Ga0207693_11264238	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	554	Open in IMG/M
3300025929\|Ga0207664_11147011	Not Available	694	Open in IMG/M
3300025932\|Ga0207690_10643101	Not Available	869	Open in IMG/M
3300025962\|Ga0210070_1017924	Not Available	812	Open in IMG/M
3300025985\|Ga0210117_1063650	Not Available	630	Open in IMG/M
3300026089\|Ga0207648_10042282	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	4001	Open in IMG/M
3300027056\|Ga0209879_1041930	Not Available	750	Open in IMG/M
3300027490\|Ga0209899_1016524	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1670	Open in IMG/M
3300027577\|Ga0209874_1021250	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	1837	Open in IMG/M
3300027675\|Ga0209077_1136540	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	684	Open in IMG/M
3300030606\|Ga0299906_10655198	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	791	Open in IMG/M
3300031740\|Ga0307468_102258748	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	528	Open in IMG/M
3300031949\|Ga0214473_10206778	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	2270	Open in IMG/M
3300032053\|Ga0315284_10917397	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	998	Open in IMG/M
3300032118\|Ga0315277_11087709	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	721	Open in IMG/M
3300032180\|Ga0307471_101046764	Not Available	983	Open in IMG/M
3300032205\|Ga0307472_100901531	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	819	Open in IMG/M
3300032516\|Ga0315273_10373054	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	1927	Open in IMG/M
3300032516\|Ga0315273_10705680	Not Available	1325	Open in IMG/M
3300032770\|Ga0335085_11208586	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetota bacterium	803	Open in IMG/M
3300032782\|Ga0335082_10673694	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	896	Open in IMG/M
3300032805\|Ga0335078_12091190	All Organisms → cellular organisms → Bacteria	602	Open in IMG/M
3300032892\|Ga0335081_11250955	All Organisms → cellular organisms → Bacteria	842	Open in IMG/M
3300033433\|Ga0326726_10722337	All Organisms → cellular organisms → Bacteria → Proteobacteria	962	Open in IMG/M
3300034090\|Ga0326723_0239454	Not Available	808	Open in IMG/M
3300034176\|Ga0364931_0148296	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	756	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	73.23%
Host-Associated	Host-Associated	26.77%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	59.06%
Plants	Host-Associated → Plants	26.77%
Aquatic	Environmental → Aquatic	14.17%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	56.69%
Rhizoplane	Host-Associated → Plants → Rhizoplane	14.96%
Rhizosphere	Host-Associated → Plants → Rhizosphere	11.81%
Freshwater	Environmental → Aquatic → Freshwater	10.24%
Marine	Environmental → Aquatic → Marine	3.94%
Peat	Environmental → Terrestrial → Peat	1.57%
Floodplain	Environmental → Terrestrial → Floodplain	0.79%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	22.05%
Loam	Environmental → Terrestrial → Soil → Loam	14.96%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	12.60%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	7.87%
Sand	Environmental → Terrestrial → Soil → Sand	7.09%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	7.09%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	7.09%
Lake	Environmental → Aquatic → Freshwater → Lake	3.15%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	3.15%
Sediment	Environmental → Aquatic → Freshwater → Sediment	3.94%
Wetlands	Environmental → Aquatic → Marine → Wetlands	3.94%
Soil	Host-Associated → Plants → Rhizosphere → Soil	3.94%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	1.57%
Sediment	Environmental → Terrestrial → Floodplain → Sediment	0.79%
Soil	Host-Associated → Plants → Rhizoplane → Soil	0.79%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	12.60%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	11.81%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	9.45%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	7.87%
Unclassified	Environmental → Terrestrial → Soil → Sand → Unclassified	7.09%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	7.09%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	7.09%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment	3.15%
Unclassified	Environmental → Aquatic → Marine → Wetlands → Unclassified	3.15%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	3.94%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	3.94%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	3.94%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	3.94%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	2.36%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	2.36%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	2.36%
Unclassified	Environmental → Terrestrial → Soil → Loam → Unclassified	1.57%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	1.57%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	0.79%
Sediment	Environmental → Aquatic → Marine → Wetlands → Sediment	0.79%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	0.79%
Uranium Contaminated	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated	0.79%
Unclassified	Environmental → Terrestrial → Floodplain → Sediment → Unclassified	0.79%
Unclassified	Host-Associated → Plants → Rhizoplane → Soil → Unclassified	0.79%

Habitat	Taxonomy	Distribution
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	8.66%
Groundwater Sand	Environmental → Terrestrial → Soil → Sand → Unclassified → Groundwater Sand	7.09%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	7.09%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	6.30%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	5.51%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment	3.15%
Natural And Restored Wetlands	Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands	3.15%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	3.15%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment	3.94%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	3.94%
Freshwater Wetlands	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Freshwater Wetlands	2.36%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	2.36%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	2.36%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	2.36%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	2.36%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	2.36%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	2.36%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	1.57%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	1.57%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	1.57%
Soil	Environmental → Terrestrial → Soil → Loam → Unclassified → Soil	1.57%
Peat Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil	1.57%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	1.57%
Tabebuia Heterophylla Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere	1.57%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	1.57%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	1.57%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	1.57%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	1.57%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	1.57%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	0.79%
Wetland	Environmental → Aquatic → Marine → Wetlands → Sediment → Wetland	0.79%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	0.79%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Permafrost	0.79%
Soil	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated → Soil	0.79%
Natural And Restored Wetlands	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Natural And Restored Wetlands	0.79%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	0.79%
Sediment	Environmental → Terrestrial → Floodplain → Sediment → Unclassified → Sediment	0.79%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	0.79%
Corn, Switchgrass And Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	0.79%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.79%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Soil → Unclassified → Miscanthus Rhizosphere	0.79%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.79%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.79%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	0.79%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	0.79%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000364	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000789	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000955	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300001213	Combined assembly of wetland microbial communities from Twitchell Island in the Sacramento Delta (Jan 2013 JGI Velvet Assembly)	Environmental	Open in IMG/M
3300002239	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S2	Host-Associated	Open in IMG/M
3300004058	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Sandmound_ThreeSqB_D1	Environmental	Open in IMG/M
3300004062	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Sandmound_ThreeSqA_D2	Environmental	Open in IMG/M
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental	Open in IMG/M
3300005045	Permafrost microbial communities from Fox Tunnel, Fairbanks, Alaska, USA	Environmental	Open in IMG/M
3300005093	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All Blocks	Environmental	Open in IMG/M
3300005164	Soil and rhizosphere microbial communities from Laval, Canada - mgLAC	Environmental	Open in IMG/M
3300005331	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG	Host-Associated	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005340	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG	Environmental	Open in IMG/M
3300005366	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG	Host-Associated	Open in IMG/M
3300005434	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG	Environmental	Open in IMG/M
3300005455	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG	Host-Associated	Open in IMG/M
3300005456	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG	Host-Associated	Open in IMG/M
3300005458	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG	Environmental	Open in IMG/M
3300005530	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG	Environmental	Open in IMG/M
3300005544	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3L metaG	Environmental	Open in IMG/M
3300005547	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-3 metaG	Environmental	Open in IMG/M
3300005563	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2	Host-Associated	Open in IMG/M
3300005578	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2	Host-Associated	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300005842	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2	Host-Associated	Open in IMG/M
3300005843	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2	Host-Associated	Open in IMG/M
3300005937	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1	Host-Associated	Open in IMG/M
3300006173	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG	Environmental	Open in IMG/M
3300006175	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG	Environmental	Open in IMG/M
3300006755	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter	Environmental	Open in IMG/M
3300006806	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100	Environmental	Open in IMG/M
3300006844	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2	Host-Associated	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300006954	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Control	Environmental	Open in IMG/M
3300009011	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-4 metaG	Host-Associated	Open in IMG/M
3300009078	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P8 Core (1) Depth 10-12cm September2015	Environmental	Open in IMG/M
3300009101	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG	Host-Associated	Open in IMG/M
3300009148	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG	Host-Associated	Open in IMG/M
3300009157	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 19-21cm March2015	Environmental	Open in IMG/M
3300009166	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P8 Core (1) Depth 10-12cm May2015	Environmental	Open in IMG/M
3300009168	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (6) Depth 19-21cm September2015	Environmental	Open in IMG/M
3300009545	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG	Host-Associated	Open in IMG/M
3300009551	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG	Host-Associated	Open in IMG/M
3300009810	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S3_20_30	Environmental	Open in IMG/M
3300009811	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N3_20_30	Environmental	Open in IMG/M
3300009817	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S3_10_20	Environmental	Open in IMG/M
3300009836	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N1_10_20	Environmental	Open in IMG/M
3300009837	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N1_20_30	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010371	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-1	Environmental	Open in IMG/M
3300010373	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-4	Environmental	Open in IMG/M
3300010396	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-2	Environmental	Open in IMG/M
3300010397	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-4	Environmental	Open in IMG/M
3300010401	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-1	Environmental	Open in IMG/M
3300012931	Freshwater wetland microbial communities from Ohio, USA - Open water 3 Core 3 Depth 3 metaG	Environmental	Open in IMG/M
3300012955	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_216_MG	Environmental	Open in IMG/M
3300012964	Freshwater wetland microbial communities from Ohio, USA - Open water 3 Core 3 Depth 4 metaG	Environmental	Open in IMG/M
3300013102	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG	Host-Associated	Open in IMG/M
3300013105	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG	Host-Associated	Open in IMG/M
3300013308	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG	Host-Associated	Open in IMG/M
3300014255	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNE_TuleC_D2	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300017792	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG	Host-Associated	Open in IMG/M
3300017939	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_BV02_MP12_10_MG	Environmental	Open in IMG/M
3300017944	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0815_BV2_10_20_MG	Environmental	Open in IMG/M
3300017947	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0815_BV2_4_20_MG	Environmental	Open in IMG/M
3300017966	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_BV02_MP12_20_MG	Environmental	Open in IMG/M
3300017993	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SourceSoil_3	Environmental	Open in IMG/M
3300018029	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_BV01_MP06_20_MG	Environmental	Open in IMG/M
3300018032	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_BV01_MP10_20_MG	Environmental	Open in IMG/M
3300018422	Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 124 T	Environmental	Open in IMG/M
3300025160	Soil microbial communities from Rifle, Colorado, USA - sediment 10ft 2	Environmental	Open in IMG/M
3300025289	Soil microbial communities from Rifle, Colorado, USA - sediment 16ft 2	Environmental	Open in IMG/M
3300025313	Soil microbial communities from Rifle, Colorado - Rifle CSP2_sed 13_3 (SPAdes)	Environmental	Open in IMG/M
3300025327	Soil microbial communities from Rifle, Colorado - Rifle CSP2_sed 13_1 (SPAdes)	Environmental	Open in IMG/M
3300025905	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025915	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025929	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300025932	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025962	Wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Sandmound_ThreeSqB_D2 (SPAdes)	Environmental	Open in IMG/M
3300025985	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Sandmound_ThreeSqC_D2 (SPAdes)	Environmental	Open in IMG/M
3300026089	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300027056	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N3_20_30 (SPAdes)	Environmental	Open in IMG/M
3300027490	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S1_0_10 (SPAdes)	Environmental	Open in IMG/M
3300027577	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N1_20_30 (SPAdes)	Environmental	Open in IMG/M
3300027675	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 10-12cm March2015 (SPAdes)	Environmental	Open in IMG/M
3300030606	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT145D125	Environmental	Open in IMG/M
3300031740	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05	Environmental	Open in IMG/M
3300031949	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT98D197	Environmental	Open in IMG/M
3300032053	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G09_16	Environmental	Open in IMG/M
3300032118	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G05_15	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental	Open in IMG/M
3300032516	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G02_0	Environmental	Open in IMG/M
3300032770	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.5	Environmental	Open in IMG/M
3300032782	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.1	Environmental	Open in IMG/M
3300032805	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.2	Environmental	Open in IMG/M
3300032892	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.5	Environmental	Open in IMG/M
3300033433	Lab enriched peat soil microbial communities from Michigan Hollow, Ithaca, NY, United States - MHF15MN	Environmental	Open in IMG/M
3300034090	Peat soil microbial communities from Michigan Hollow, Ithaca, NY, United States - MHF00N	Environmental	Open in IMG/M
3300034176	Sediment microbial communities from East River floodplain, Colorado, United States - 21_j17	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
INPhiseqgaiiFebDRAFT_1052884531	3300000364	Soil	IPTGLEIIATFAEWPNMDREILLQQLAQAEQNVAEGRAFIAEQQRLIVESERDGQFSAETIRVLEKFLMLQQLREQERARILDEISEVS*
JGI1027J11758_127322312	3300000789	Soil	SASCAEAQPMEREILLRQLVEAEQSVAESKGFIAQHQRLIVQSERDGQDXAETIXLLDKLLLLQQSREQERARILDELSDAS*
JGI1027J12803_1008632482	3300000955	Soil	MEREILLRQLVEAEQSVAESKGFIAQHQRLIVQSERDGQDAAETIRLLDKLLLLQQSREQERARILDELSDAS*
JGIcombinedJ13530_1023664952	3300001213	Wetland	MDRQILLHQLTQAEQSVAEGRAFIAQQQRLIVEAERVTTMQAETFRVLEKFLILQQIREQERARILDAISETTASTPPNRP*
JGI24034J26672_101206351	3300002239	Corn, Switchgrass And Miscanthus Rhizosphere	EQGVAEGKAFIAEQQRLIVESERDDCHDTAETMRLLEAFLVLQRSREEDRARILDELSE*
Ga0055498_100011205	3300004058	Natural And Restored Wetlands	MDREILLRQLVQVEQGVAEGKAFIAEQQRLIVESERDDCHDTAETMRLLEAFLVLQRSREEDRARILDELSE*
Ga0055500_100064812	3300004062	Natural And Restored Wetlands	MDREVLLLRLAQAEQGVAESKAFVARQQRLIVESERDGQDAAEIIRLLDKLLLLQQLREQERAKILDEISEPS*
Ga0062595_1000100022	3300004479	Soil	MDREVLLQRLAQAEQSVAESKALVARQQRLIVESERDGQDVVETIRLLNKFLLLQQLREQERAKILDEISEPSRGRHHSKHH
Ga0071328_1767515	3300005045	Permafrost	MTPKLLALGRRERKDREVLLLRLAQAERSVAESKAFVARQQRLIVEPERDGQDAAETIRLLDKLLQLQQLREERATILDEISEAS*
Ga0062594_1017553982	3300005093	Soil	AQAEQSVAESKALVARQQRLIVESERDGQDVVETIRLLNKFLLLQQLREQERAKILDEISEPS*
Ga0066815_101171331	3300005164	Soil	MVREILLRQLVQVEQGVAEGKAFIAEQQRLIVESERDDCHDTAETMRLLEAFLVLQRSREEDRARILDE
Ga0070670_1002602832	3300005331	Switchgrass Rhizosphere	MDREVLLQRLAQAEQSVAESKALVARQQRLIVESERDGQDVVETIRLLNKFLLLQQLREQERAKILDEISEPS*
Ga0066388_1020806571	3300005332	Tropical Forest Soil	MDREILLQQLVQAEQSVAEARAFIAQQQRLIVESERDGQFSAETIRVLEKFLILQQLREQERARILDEISEVS*
Ga0070689_1001095432	3300005340	Switchgrass Rhizosphere	MDREILLQRLAQAEQGVAESKAFVARQQRLIVESERDGQDAAETIRLLDKFLLLQQLREQERAKIFDEISEPS*
Ga0070659_1006346822	3300005366	Corn Rhizosphere	MDREILLQRLAQAEQGVAESKAFVARQQRLIVESERDGQDAAETIRLLNKFLLLQQLGEQERAKIFDEISEPS*
Ga0070709_108533492	3300005434	Corn, Switchgrass And Miscanthus Rhizosphere	MDRQILLQQLAQAERSVAEGRAFIAQQQRLIVEAERDGDDAAGTFRVLEKFLIVQQTREQERARILDAISETIASTPQNRP*
Ga0070663_1007987842	3300005455	Corn Rhizosphere	MDREVLLQRLAQAEQSVAESKAFVARQQRLIVESERDGQDVAETIRLLNKFLLLQQLREQERAKILDEISEPS*
Ga0070678_1010936772	3300005456	Miscanthus Rhizosphere	MDREILLRQLVQVEQGVAERKAFIAEQQRLIVESERDDCHDTAETMRLLEAFLVLQRSREEDRARILDELSE*
Ga0070681_111212122	3300005458	Corn Rhizosphere	LTYRKPGETQRMDREILLRQLVQVEQGVAEGKAFIAEQQRLIVESERDDCHDTAETMRLLEAFLVLQRSREEDRARILDELSE*
Ga0070679_1006063671	3300005530	Corn Rhizosphere	MDREILLQRLAQAEQGVAESKAFVARQQRLIVESERDGQDAAETIRLLNKFLLLQQLREQERAKILDEISEPS*
Ga0070686_1002223411	3300005544	Switchgrass Rhizosphere	ALGRRERMDREVLLQRLAQAEQGVAESKAFVARQQRLIVESERDGQDAAETIRLLDKFLLLQQLREQERAKIFDEISEPSRARHHSKH*
Ga0070693_1001404732	3300005547	Corn, Switchgrass And Miscanthus Rhizosphere	MDREVLLQRLAQAEQSLAESKALVARQQRLIVESERDGQDVVETIRLLNKFLLLQQLREQERAKILDEISEPS*
Ga0068855_1024175732	3300005563	Corn Rhizosphere	DREVLLQRLAQAEQSVAESKALVARQQRLIVESERDGQDVVETIRLLNKFLLLQQLREQERAKILDEISEPS*
Ga0068854_1016052642	3300005578	Corn Rhizosphere	MDREILLRQLVQVEQGVAEHKAFIAEQQRLIVESERDDCHDTAETMRLLEAFLVLQRSREEDRARILDELSE*
Ga0066905_1015790692	3300005713	Tropical Forest Soil	MDRKILLRHLVQAEQDVAEGKALIAKQQRLIVESERQDCQDVAQAMRLLEAFLVLQRSREEHRARILDELYIQ*
Ga0066903_1013380541	3300005764	Tropical Forest Soil	MDREVLLLRLAQAEQSVAESKAFIARQQRLIVESERDGQDAAETLRLLDKLLLLQQAREQERAEILDEIFEAS*
Ga0066903_1022983071	3300005764	Tropical Forest Soil	MDREVLLLRLAQAEQSVAESKAFVARQQRLIVESERDGQDTGETIRLLDELLLFQQLREQERAKILDEISEAS*
Ga0066903_1065532821	3300005764	Tropical Forest Soil	MDREILLQQLVQAEQSVAEARAFIAQQQRLIVESERDGQFSAETIRVLEKFLILQQLREQERTRILDEISEVS*
Ga0068858_1016097052	3300005842	Switchgrass Rhizosphere	LLQRLAQAEQSVAESKALVARQQRLIVESERDGQDVVETIRLLNKFLLLQQLREQERAKIFDEISEPS*
Ga0068860_1005367531	3300005843	Switchgrass Rhizosphere	MDREILLQRLAQAEQGVAESKAFVARQQRLIVESERDGQDAAETIRLLNKFLLLQQLREQERAKIFDEISEPS*
Ga0081455_100335335	3300005937	Tabebuia Heterophylla Rhizosphere	MDKKILLRHLVQAEQDVAEGKAFIAKQQRLIVESERDDCQDVAETMRVLEAFLVLQRSREEARARILDELSE*
Ga0081455_100487743	3300005937	Tabebuia Heterophylla Rhizosphere	MQRELLLRQLAQAEQHVAEGKAFIAQQQRLIVESERDGQDVAEIIRVLEKFLTIQQSREQERVRILDEISEVS*
Ga0070716_1017079352	3300006173	Corn, Switchgrass And Miscanthus Rhizosphere	MDRQILLQQLAQAERSVAEGRAFIAQQQRLIVEAERDGDDAAGTFRVLEKFLIVQQTREQERARILDAISETIASTP
Ga0070712_1012260272	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	MHSAVAQYMEREFLLGQLVQAEQDVAESKAFVAEQQRVIVVSEREGHDCAEAIRLLEAFLLIKQSREEDRARILDELFEST*
Ga0079222_101220063	3300006755	Agricultural Soil	MDRQILLQQLAQAERSVAEGRAFIAQQQRLIVEAERDGDDAAETFRVLEKFLIVQQTREQERARILDAISE
Ga0079220_115539122	3300006806	Agricultural Soil	MHSAVVQHMEREFLLRQLVQAEQDVAESKAFVAEQQRVIVESEREGHDCAKAIRRLEAFLLIQQSREEDRAKILDELFEST*
Ga0075428_1019537111	3300006844	Populus Rhizosphere	MDRKILLRHLVQAEQDVAEGKAFIAKQQRLIVESERDDCQDVAQAMRLLEAFLVLQQSREEHRARILDELY
Ga0075425_1021259891	3300006854	Populus Rhizosphere	MYSGSAEAHCTDRDLLLRRLAQAEQRVAEGKAFIAQQQQLIVESERDGLDTVEALRLLENFLKLQQSRELDRDQILDELSEIS*
Ga0079219_103141761	3300006954	Agricultural Soil	QAEQSVAEGRAFIAQQQRLIVEAERDGEDATGTFRVLEKFLILQQSREQERARILDAISETITSTPPNRP*
Ga0105251_104802031	3300009011	Switchgrass Rhizosphere	MDREILLRQLVQVEQGVAEGKAFIAEQQRLIVESERDDCHDTAETMRLLEAFLVLQRSREEDRARILDE
Ga0105106_101591032	3300009078	Freshwater Sediment	MDREILLRRLVQAEQNVAEGKAFIAKQQRLIVESERDGYDTAETMRLLETFLLLQQSRELDRARILDELSE*
Ga0105247_118292592	3300009101	Switchgrass Rhizosphere	MNREILLRRLAQAEQSVAEGKAFIAQQQQLVVESERDGHDAAENWRLLEKFLKLQQSRELDRAQILDELSEIS*
Ga0105243_124405021	3300009148	Miscanthus Rhizosphere	LVQVEQGVAERKAFIAEQQRLIVESERDDCHDTAETMRLLEAFLVLQRSREEDRARILDELSE*
Ga0105092_105208551	3300009157	Freshwater Sediment	MNREVLLRQLVQAEQDVAESKAFVANQQRLIVESERNDCHDTAETMRLLEAFLVLQRSREEDRARILDELSE*
Ga0105100_106170082	3300009166	Freshwater Sediment	MDREILLRQLVQAEQDVAEGNALIAEQQRLIVKSERDGCHDIAETMRLLEAFLLLQRSRGGPC*
Ga0105104_108086621	3300009168	Freshwater Sediment	MDRTILLRQLVQAEQDVAEGKAFIAEQQRLIAESEQDDCQDVAETMRLLEAFLVLQRSREEDRARILDELSE*
Ga0105237_117526322	3300009545	Corn Rhizosphere	AQAEQSVAESKAFVARQQRLIVESERDGQDAAETIRLLNKFLLLQQLGEQERAKIFDEISEPS*
Ga0105238_103835211	3300009551	Corn Rhizosphere	LAAAASPALGRRERMDREVLLLRLAQAEQNVAESKAFVARQQRLIVESERDGQDAAETIRLLDKFLLLQQLREQERAKIFDEISEPS*
Ga0105088_10938431	3300009810	Groundwater Sand	MAREILLGQLAQAEQHVAEGKAFIAKQQRLIVESERDGQDTAESMRLLEAFLLLQQSREDDRA
Ga0105084_10681921	3300009811	Groundwater Sand	MDREILLRQLVQAEQNVAEGKAFIAKQQRLIVESERDGCRDTAETMRLLEAFLLLQRSREEDRARILDELSE*
Ga0105062_10096511	3300009817	Groundwater Sand	MDRENHLRQLVQAEQNVAEGKAFIAKQQRLIVESERDSCRDTAETMRLREAFLLLQRS
Ga0105068_10331301	3300009836	Groundwater Sand	MDRENHLRQLVQAEQNVAEGKAFIAKQQRLIVESERDGCRDTAETMRLLEAFLLLQRSREEDRARILDELSE*
Ga0105058_10638963	3300009837	Groundwater Sand	MAREILLGQLAQAEQHVAEGKAFIAKQQRLIVESERDGCRDTAETMRLLEAFLLLQRSREEDRARILDELSE*
Ga0105058_10649632	3300009837	Groundwater Sand	MDREILLRQLVQAEQDVAEGKASIAKQQRLIVESERDGCHDTAETMRLLEAFLMLQQSREEDRARILDELAE*
Ga0126377_107538882	3300010362	Tropical Forest Soil	MDRKILLRQLVQAEQDVAEGKAFIAKQQRLIVESERDDCQDVAETMRLLEAFLVLQRSREEARARILDELSE*
Ga0134125_107732482	3300010371	Terrestrial Soil	MDRQILLQQLAQAERSVAEGRAFIAQQQRLIVEAERDGEDATGTFRVLEKFLILQQSREQERARILDAISETITSTPPNRP*
Ga0134125_119430901	3300010371	Terrestrial Soil	MDREVLLLRLAQAEQNVAESKAFVARQQRLIVESERDGQDAAETIRLLDKFLLLQQLREQERAKILDEMSEPS*
Ga0134128_106999632	3300010373	Terrestrial Soil	MDRQILLQQLAQAEQSVAEGRAFIAQQQRLIVEAERDGEDATGTFRVLEKFLILQQSREQERARILDAISETITSTPPNRP*
Ga0134128_118391242	3300010373	Terrestrial Soil	MDREVLLQRLAQAEQSVAESKALVARQQRLIVESERDGQDVVETIRLLNKFLLLQQLREQERA
Ga0134126_107201571	3300010396	Terrestrial Soil	MDREVLLLRLAQAEQSVAESKAFVARQQRLIVESERDGQDAAETIRLLNKFLLLQQLREQERAKILDEISEPS*
Ga0134124_114951212	3300010397	Terrestrial Soil	MDREVLLQRLAQAEQSVAESKALVARQQRLIVESERDGQDVVETIRLLNKFLLLQQLREQEREKILDEISEPS*
Ga0134121_109129652	3300010401	Terrestrial Soil	LLQRLAQAEQGVAESKAFVARQQRLIVESERDGQDAAETIRLLDKFLLLQQLREQERAKILDEISEPS*
Ga0134121_112835172	3300010401	Terrestrial Soil	MNRQILLQQFAQAERSVAEGRAFIAQQQRLIVEAERDGDDAAETFRVLEKFLIVQQTREQERARILDAISETITSTPPNRP*
Ga0153915_112128781	3300012931	Freshwater Wetlands	MDREILLRQLVQAEQGVAEGKAFIAEQQRLIVESERDDCHDTAETMRLLEAFLVLQRSREEDRARILDELSE*
Ga0164298_103855672	3300012955	Soil	MDREILLRQLVQVEQGVAEGKAFIAEQQRLIVESERDDCHDTAETMRLLEAFLVLQRSRE
Ga0153916_112752781	3300012964	Freshwater Wetlands	MDREILLRQLVQVEQGVAEGKAFIAKQQRLIVKSERDDCHDIAETMRLLEAFLVLQRSREEDRARILDELSE*
Ga0153916_116749041	3300012964	Freshwater Wetlands	MTPKLLDVSQALGRRERMDREVLLLRLAQAEQGVAESKAFVARQQRLIVESERDGQDAAEIIRLLDKLLLLQQLREQERAKILDEISEPS*
Ga0157371_115630922	3300013102	Corn Rhizosphere	MDREVLLQRLAQAEQSVAESKAFVARQQRLIVESERDGQDVVETIRLLNKFLLLQQLREQERAKIFDEISEPS*
Ga0157369_106187851	3300013105	Corn Rhizosphere	MDREVLLQRLAQAEQSVAESKAFVARQQRLIVESERDGQDAAETIRLLNKFLLLQQLREQERAKILDEISEPS*
Ga0157375_132589801	3300013308	Miscanthus Rhizosphere	MDREVLLQRLAQAEQSVAESKAFVARQQRLIVESERDGQDAAETIRLLDKFLLLQQLREQERAKILDEMSEPS*
Ga0075320_10825892	3300014255	Natural And Restored Wetlands	MDREILLRHLVQAEQDVAEGKALIAKQQRLIVDSERDDCQDVAETMRLLEEFLVLQRSREEDRARIL
Ga0132258_106833114	3300015371	Arabidopsis Rhizosphere	MDREVLLLRLAQAEQSVAESKAFVARQQRLIGESERDGQESAETIRLLDKFLLLQQLREQERAKILDEMSEPS*
Ga0132258_108500822	3300015371	Arabidopsis Rhizosphere	MDRQILLQQLAQAEQSVAEGRAFIAQQQRLIVETERDGDDAAETFRVLEKFLILQQSREQERARILDAISETIASTPPNRP*
Ga0132258_133080231	3300015371	Arabidopsis Rhizosphere	VEQGVAEGKAFIAEQQRLIVESERDDCHDTAETMRLLEAFLVLQRSREEDRARILDELSE
Ga0132256_1031239731	3300015372	Arabidopsis Rhizosphere	MHSAVAQHMDGEFLLPQLVQAEQDVAESKAFVTQQQRQREAHDCAKAIRRLEAFLLIQQSREEGRAKILDELFESS*
Ga0132257_1000856283	3300015373	Arabidopsis Rhizosphere	MDREVLLLRLAQAEQSVAESKAFVARQQRLIVESERDGQDAAETIRLLNKFLLLQQLREQERAKIFDEISEPS*
Ga0132257_1020051562	3300015373	Arabidopsis Rhizosphere	NMDRQILLQQLAQAERSVAEGRAFIAQQQRLIVEAERDGEDATGTFRVLEKFLILQQSREQERARILDAISETITSTPPNRP*
Ga0132255_1000345997	3300015374	Arabidopsis Rhizosphere	QRLAQAEQGVAESKAFVARQQRLIVESERDGQDAAETIRLLNKFLLLQQLREQERAKIFDEISEPS*
Ga0132255_1003827944	3300015374	Arabidopsis Rhizosphere	MDREVLLLRLAQAEQSVAESKAFVARQQRLIVESERDGQDAAETIRLLDKFLLLQQLREQERAKILDEMSEPS*
Ga0132255_1008264753	3300015374	Arabidopsis Rhizosphere	MDRQILLQQLAQAEQSVAEGRAFIAQQQRLIVETERDGDDAAETFRVLEKFLILQQSREQER
Ga0132255_1027256042	3300015374	Arabidopsis Rhizosphere	MDRQILLQQLAQAERSVAEGRAFIAQQQRLIVEAERDGEDATGTFRVLEKFLILQQSREQERARILDAISETIASTPPNRP*
Ga0163161_109613712	3300017792	Switchgrass Rhizosphere	MDREILLRQLVQVEQGVAEGKAFIAEQQRLIVESERDDCHDTAETMRLLEAFLVLQRSREEDRARILDELSE
Ga0187775_101346892	3300017939	Tropical Peatland	MDRQILLQQLAQAEQSVAEGRAFIAQQQRLIVEAERDGDDAAETFRVLETFLILQQTREQEHARILDAISETTASTPPNRP
Ga0187786_102296181	3300017944	Tropical Peatland	MDRQILLHQLAQAEQSVAEGRAFIAQQQRLIVEAERDGDDAAETFRVLEKFLILQQTREQERARILDAISETTASTPPNRP
Ga0187785_100030271	3300017947	Tropical Peatland	QLAQAEQSVAEGRALIAQQQRLIVEAERDGDDAAETFRVLEKFLILQQTREQERARILDAISETTASTPPNRP
Ga0187785_105193202	3300017947	Tropical Peatland	MEREFLLRQLVQAEQDVAESKAFVAEQQRVIVESEREGHDCAKAIGRLEAFLLIKQSREEGCAKILDQLFESS
Ga0187776_102577692	3300017966	Tropical Peatland	MDRQILLHQLAQAEQSVAEGRALIAQQQRLIVEAERDGDDAAETFRVLEKFLILQQTREQEHARILDAISETTASTPPNRP
Ga0187776_111225131	3300017966	Tropical Peatland	EREILLRQLVQAEQSVAEGKALIAQQQRLIVESERDGDDTAETMRLLEAFLLLQQSRADDRARILDELAD
Ga0187776_114990162	3300017966	Tropical Peatland	MDREFLVRQLVQAEQDVAESKAFVAEQQRVIVESEREGHDCAKAIRRLEAFLLIKQSREE
Ga0187823_100750682	3300017993	Freshwater Sediment	MDRQILLQQLAQAEQSVAEGRAFIAQQQRLIVEAERDGDDAAETFRVLEKFLIVQQTREQERARILDAISETITSTPPNRP
Ga0187787_100395102	3300018029	Tropical Peatland	MDRQILLHQLAQAEQSVAEGRAFIAQQQRLIVEAERDGDDAAETFRVLEKFLILQQTREQEHARILDAISETTASTPPNRP
Ga0187788_100085023	3300018032	Tropical Peatland	MDRQILLQQLAQAEQSVAEGRALIAQQQRLIVEAERDGDDAAETFRVLEKFLILQQTREQEHARILDAISETTASTPPNRP
Ga0187788_101252722	3300018032	Tropical Peatland	MERETLLRQLVQAEQEVAESKAFVAEQQREIVESEREGHDCVKALHRLEAFLLIHQSRLEDRAKILDELFEST
Ga0187788_102215502	3300018032	Tropical Peatland	MDREILLRQLAQAEHYVAEGKAFIAKQQRLIVASERDGRETAETMRLLEAFLLLQRSREDDRARILDELSA
Ga0190265_124685121	3300018422	Soil	MAREILLRQLAQAEQYIAEGKAFIAKQQRLIAVSERDGQDAAETMRLLEAFLPLQQSHEDDRARLLDELSESSFEDYLLRCVPFH
Ga0209109_100988233	3300025160	Soil	MDRENHLRQLVQAEQNVAEGKAFIAKQQRLIVESERDGCRDTAETMRLLEAFLLLQRSREEDRARILDELSE
Ga0209002_104750182	3300025289	Soil	MAREILLGQLAQAEQHVAEGKAFIAKQQRLIVESERDGCRDTAETMRLLEAFLLLQRSREEDRARILDELSE
Ga0209431_108588091	3300025313	Soil	MERGILLRQLVEAEQSVAESKAFIAQQQRLIVQSERDGQDAAETIRLLGKLLLLHQSREQERARILDELFGAS
Ga0209751_109919301	3300025327	Soil	MERGILLRQLVEAEQSVAESKAFIAQQQRLIVQSERDGQDAAETIRLLGKLLLLHQSREQ
Ga0207685_104195492	3300025905	Corn, Switchgrass And Miscanthus Rhizosphere	MDRQILLQQLAQAERSVAEGRAFIAQQQRLIVEAERDGDDAAGTFRVLEKFLIVQQTREQERARILDAISETIASTPPNRP
Ga0207685_108693681	3300025905	Corn, Switchgrass And Miscanthus Rhizosphere	MHSAVAQYMEREFLLGQLVQAEQDVAESKAFVAEQQRAIVESEREGHDCVKALRRLEAFLLIQQSREEGRAKILDELFEPS
Ga0207693_112642382	3300025915	Corn, Switchgrass And Miscanthus Rhizosphere	MHSAVAQYMEREFLLGQLVQAEQDVAESKAFVAEQQRVIVVSEREGHDCAEAIRLLEAFLLIKQSREEDRAKILDELFE
Ga0207664_111470113	3300025929	Agricultural Soil	MDRQILLQQLAQAEQSVAEGRAFIAQQQRLIVEAERDGEDATGTFRVLEKFLILQQSREQERARILNAISETIAS
Ga0207690_106431012	3300025932	Corn Rhizosphere	MDREILLQRLAQAEQGVAESKAFVARQQRLIVESERDGQDAAETIRLLNKFLLLQQLGEQERAKIFDEISEPS
Ga0210070_10179241	3300025962	Natural And Restored Wetlands	MTPKLLDVSQALGRRERMDREVLLLRLAQAEQGVAESKAFVARQQRLIVESERDGQDAAEIIRLLDQLLLLQQLREQERAKILDEISEPS
Ga0210117_10636501	3300025985	Natural And Restored Wetlands	LTYRKSGETQRMDREILLRQLVQVEQGVAEGKAFIAEQQRLIVESERDDCHDTAETMRLLEAFLVLQRSREEDRARILDELSE
Ga0207648_100422823	3300026089	Miscanthus Rhizosphere	MDREILLRQLVQVEQGVAEGKALIAEQQRLIVESERDDCHDTAETMRLLEAFLVLQRSREEDRARILDELSE
Ga0209879_10419303	3300027056	Groundwater Sand	MDREILLRQLVQAEQNVAEGKAFIAKQQRLIVESERDGCRDTAETMRLLEAFLLLQQSREDDRARILDELAE
Ga0209899_10165241	3300027490	Groundwater Sand	NSAETQHMAREILLGQLAQAEQHVAEGKAFIAKQQRLIVESERDGCRDTAETMRLLEAFLLLQRSREEDRARILDELSE
Ga0209874_10212504	3300027577	Groundwater Sand	MDRENHLRQLVQAEQNVAEGKAFIAKQQRLIVESERDGQDTAESMRLLEAFLLLQQSREDDRARILDELAE
Ga0209077_11365401	3300027675	Freshwater Sediment	VETQRVDREILLRHLVQAEQVVAEGKAFIAEQQRLIVESERDDCQDVAQAMRLLEAFLVLQRSREEDRARILDELSE
Ga0299906_106551981	3300030606	Soil	MDREILLRQLVQAEQNVAEGKAFIAKQQRLIVESERDGCRDTAETMRLLEAFLLLQRSREEDRARILDELSE
Ga0307468_1022587482	3300031740	Hardwood Forest Soil	MDRKILLRHLVQAEQDVAEGKAFIAKQQRLIVESERDDCQDVAETMRLLEAFLVLQRSREEDRARILDELSE
Ga0214473_102067782	3300031949	Soil	MAREILLGQLAQAEQHVAEGKAFIAKQQRLIVESERDGQDTAESMRLLVAFLLLQQSREVVRARILDELAE
Ga0315284_109173974	3300032053	Sediment	MDREILLRQLVQAEQHVAEGKAFIAKQRRLIVESERDGCHDTPETMRLLEAFLLLPAIARGWPR
Ga0315277_110877092	3300032118	Sediment	MDREILLRQLVQAEQHVAEGKAFIAQQRRLIVESERDGCHDTPETMRLLEAFLLLPAIARGWPR
Ga0307471_1010467642	3300032180	Hardwood Forest Soil	MEREILLRQLVEAEQSVAESKGFIAQHQRLIVQSERDGQDAAEAIRLLDKLLLLQQSREQERARILDELSDAS
Ga0307472_1009015312	3300032205	Hardwood Forest Soil	MDREILLRQLVQAQQDVAEGKAFIAKQQRLIVESERDDCHDTAETMRLLEAFLVLQRSREEDRARILDELSE
Ga0315273_103730542	3300032516	Sediment	MDREILVRQLVQAEQHVAEGKAFIAKQRRLIVESERDGCHDTPETMRLLEAFLPLQRSREEDRVRILDELSE
Ga0315273_107056802	3300032516	Sediment	MDREILLRQLVQAEQDVAEGKAFIAKQQRLIVASERDGFHDTAETMRLLEAFLLLQQSREEDRARILDELAE
Ga0335085_112085862	3300032770	Soil	QAERSVAEGRAFIAQQQRLIVEAERDGDDAAETFRVLEKFLIVQQTREQERARVLDAISETIASTPPNRP
Ga0335082_106736942	3300032782	Soil	MDRQILLQQLAQAEQSVAEGRAFIAQQQRLIVEAERDGEDATGTFRVLEKFLIVQQTREQERARVLDAISETIASTPPNRP
Ga0335078_120911902	3300032805	Soil	IIASFAEAPNMDRQILLQQLAQAEQSVAEGRAFIAQQQRLIVEAERDGDDAAETFRVLEKFLIVQQTREQERARVLDAISETIASTPPNRP
Ga0335081_112509552	3300032892	Soil	MDRQILLQQLAQAEQSVAEGRAFIAQQQRLIVEAERDGDDAAETFRVLEKFLIVQQTREQERARVLDAISETIASTPPNRP
Ga0326726_107223373	3300033433	Peat Soil	MDREVLLLRLAQAEQSVAESKAFVARQQRLIVESERDGQDAAETIRLLDKFLLLQQLREQERAKILDEISEPS
Ga0326723_0239454_523_744	3300034090	Peat Soil	MDREVLLLRLAQAEQSVAESKAFVARQQRLIVESERDGQDAAETIRLLDKFLLLQQRREQERAKILDEISEPP
Ga0364931_0148296_3_182	3300034176	Sediment	MAREILLGQLAQAEQHVAEGKAFIAKQQRLIVESERDGCRDTAETMRLLEAFLLLQRSRE

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F066037

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Structural matches with SCOPe domains

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences