NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0364942_0102450

Scaffold Ga0364942_0102450


Overview

Basic Information
Taxon OID3300034165 Open in IMG/M
Scaffold IDGa0364942_0102450 Open in IMG/M
Source Dataset NameSediment microbial communities from East River floodplain, Colorado, United States - 19_s17
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)926
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Floodplain → Sediment → Unclassified → Sediment → Sediment Microbial Communities From Colorado River Basin Floodplains, Colorado, United States

Source Dataset Sampling Location
Location NameUSA: Colorado
CoordinatesLat. (o)38.9229Long. (o)-106.9499Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003800Metagenome / Metatranscriptome468Y
F009579Metagenome / Metatranscriptome316Y

Sequences

Protein IDFamilyRBSSequence
Ga0364942_0102450_198_431F003800N/AMGDERRDDAPERRTRADDYSSARIGAAAAFTLVLVVLLILDVAVPGYDVSPGTLLPLLGAILALLGLEASAFWRDVR
Ga0364942_0102450_421_546F009579GGCGGMSGVELILAFFAGVAMGIALDRWLLPSLVDAWIDRLRRHGR
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