Scaffold Ga0370515_0017175

Overview

Basic Information

• Taxon OID: 3300034163
• Scaffold ID: Ga0370515_0017175
• Source Dataset Name: Peat soil microbial communities from wetlands in Alaska, United States - Goldstream_04D_14
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3355
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Unclassified → Untreated Peat Soil → Peat Soil Microbial Communities From Wetland Fen In Alaska, United States

Source Dataset Sampling Location

• Location Name: USA: Alaska
• Coordinates
  • Lat. (^o): 64.9123
  • Long. (^o): -147.839
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F077901	Metagenome / Metatranscriptome	117	Y
F090964	Metagenome / Metatranscriptome	108	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0370515_0017175_2179_2403	F090964	AGGAG	MPRRWRPPKEDRTDADAVRREGEFQQDLSDILEYGTVDDLVDLLKWHKPDIVKEELQTAIRQFHVYAREKRGLC
Ga0370515_0017175_2439_2819	F077901	AGAAGG	MAYEVFKRTGARVETPTLSITPDGRMTINAAAVRIAQESRVKSVVLLWDPTNHSLAVKIAKRGDANSYALSIAPSSHSGSLRAKSFLNYIGWKARKRERIQASWNEKERMFEATLPLEHLESEPRA