Scaffold Ga0370507_0028569

Overview

Basic Information

• Taxon OID: 3300034158
• Scaffold ID: Ga0370507_0028569
• Source Dataset Name: Peat soil microbial communities from wetlands in Alaska, United States - Frozen_pond_06D_18
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1678
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (16.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Flavobacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Unclassified → Untreated Peat Soil → Peat Soil Microbial Communities From Wetland Fen In Alaska, United States

Source Dataset Sampling Location

• Location Name: USA: Alaska
• Coordinates
  • Lat. (^o): 64.9144
  • Long. (^o): -147.8354
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F038572	Metagenome / Metatranscriptome	165	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0370507_0028569_476_592	F038572	N/A	VLTQSVGVDEAALTVLLLMTVIVPVAFAAPHPPVNGML
Ga0370507_0028569_734_850	F038572	N/A	VLTQSVGVEEAALTVLLAVTVIVPTALTVPHPPVNGML
Ga0370507_0028569_992_1108	F038572	N/A	VLIQSVGVEEAALTVLLVMTVIVPVAFAAPQPPVNGML