NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0370498_000038

Scaffold Ga0370498_000038


Overview

Basic Information
Taxon OID3300034155 Open in IMG/M
Scaffold IDGa0370498_000038 Open in IMG/M
Source Dataset NamePeat soil microbial communities from wetlands in Alaska, United States - Frozen_pond_05D_17
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)45809
Total Scaffold Genes43 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)26 (60.47%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Untreated Peat Soil → Peat Soil Microbial Communities From Wetland Fen In Alaska, United States

Source Dataset Sampling Location
Location NameUSA: Alaska
CoordinatesLat. (o)64.9142Long. (o)-147.8349Alt. (m)Depth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F086047Metagenome / Metatranscriptome111Y
F089338Metagenome / Metatranscriptome109Y

Sequences

Protein IDFamilyRBSSequence
Ga0370498_000038_14281_14499F089338AGGMTLLQIEDALTDEEELALQNGLMVKCSWCGEIIQLDGKELALAMCQTCYERMLAEFLRAQQMNQPDSHASDR
Ga0370498_000038_8116_8361F086047GAGMHGQQIAFPFRMKRPSRRDAPNTDLIGRSYKDGRATMTVTGVCLNDINRVMVERDLDGRSWSMPAWLMRLIFLEKKRKRAA

 ⦗Top⦘



© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.