Metagenome / Metatranscriptome Family F089338

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F089338
Family Type	Metagenome / Metatranscriptome
Number of Sequences	109
Average Sequence Length	72 residues
Representative Sequence	MTLLQIEDALSDEEELAQRNGLTVKCSWCGEIIQLDGKELALAMCQACYERMLAEFLRAQQMNQPDSHASDR
Number of Associated Samples	80
Number of Associated Scaffolds	109

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	67.92 %
% of genes near scaffold ends (potentially truncated)	13.76 %
% of genes from short scaffolds (< 2000 bps)	75.23 %
Associated GOLD sequencing projects	74
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.48

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (95.413 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil (47.706 % of family members)
Environment Ontology (ENVO)	Unclassified (60.550 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (57.798 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 25.00% β-sheet: 8.00% Coil/Unstructured: 67.00%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.48
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.48
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 109 Family Scaffolds
PF09720	Unstab_antitox	14.68
PF00501	AMP-binding	9.17
PF00230	MIP	7.34
PF05235	CHAD	7.34
PF05016	ParE_toxin	3.67
PF13474	SnoaL_3	2.75
PF05721	PhyH	0.92
PF02780	Transketolase_C	0.92
PF04932	Wzy_C	0.92
PF12680	SnoaL_2	0.92
PF00302	CAT	0.92
PF13231	PMT_2	0.92
PF06210	DUF1003	0.92
PF08240	ADH_N	0.92
PF02223	Thymidylate_kin	0.92
PF10459	Peptidase_S46	0.92
PF13727	CoA_binding_3	0.92
PF00072	Response_reg	0.92

COG ID	Name	Functional Category	% Frequency in 109 Family Scaffolds
COG0580	Glycerol uptake facilitator or related aquaporin (Major Intrinsic protein Family)	Carbohydrate transport and metabolism [G]	7.34
COG3025	Inorganic triphosphatase YgiF, contains CYTH and CHAD domains	Inorganic ion transport and metabolism [P]	7.34
COG5607	CHAD domain, binds inorganic polyphosphates	Function unknown [S]	7.34
COG0125	Thymidylate kinase	Nucleotide transport and metabolism [F]	0.92
COG3307	O-antigen ligase	Cell wall/membrane/envelope biogenesis [M]	0.92
COG4420	Uncharacterized membrane protein	Function unknown [S]	0.92
COG4845	Chloramphenicol O-acetyltransferase	Defense mechanisms [V]	0.92
COG5285	Ectoine hydroxylase-related dioxygenase, phytanoyl-CoA dioxygenase (PhyH) family	Secondary metabolites biosynthesis, transport and catabolism [Q]	0.92

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	95.41 %
Unclassified	root	N/A	4.59 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	95.41 %
Unclassified	root	N/A	4.59 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	95.41 %
Unclassified	root	N/A	4.59 %

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	79.82 %
Unclassified	root	N/A	4.59 %
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	2.75 %

Name	Rank	Taxonomy	Distribution
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	30.28 %
Unclassified	root	N/A	4.59 %
Blastocatellia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia	3.67 %
Planctomycetes	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes	1.83 %
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	0.92 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	30.28 %
Unclassified	root	N/A	4.59 %
Blastocatellales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales	2.75 %
Planctomycetia	class	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia	0.92 %
Spartobacteria	class	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria	0.92 %
unclassified Blastocatellia	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia	0.92 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	30.28 %
Unclassified	root	N/A	4.59 %
Pyrinomonadaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae	2.75 %
Chthoniobacterales	order	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales	0.92 %
Planctomycetales	order	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales	0.92 %
Blastocatellia bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium	0.92 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	30.28 %
Unclassified	root	N/A	4.59 %
Pyrinomonas	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → Pyrinomonas	1.83 %
unclassified Chthoniobacterales	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → unclassified Chthoniobacterales	0.92 %
Planctomycetaceae	family	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae	0.92 %
unclassified Pyrinomonadaceae	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → unclassified Pyrinomonadaceae	0.92 %
Blastocatellia bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium	0.92 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	30.28 %
Unclassified	root	N/A	4.59 %
Pyrinomonas methylaliphatogenes	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → Pyrinomonas → Pyrinomonas methylaliphatogenes	1.83 %
Chthoniobacterales bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → unclassified Chthoniobacterales → Chthoniobacterales bacterium	0.92 %
Pyrinomonadaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → unclassified Pyrinomonadaceae → Pyrinomonadaceae bacterium	0.92 %
Planctomycetaceae	family	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae	0.92 %
Blastocatellia bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium	0.92 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300005167\|Ga0066672_10128551	All Organisms → cellular organisms → Bacteria → Acidobacteria	1572	Open in IMG/M
3300005178\|Ga0066688_10502208	Not Available	781	Open in IMG/M
3300005181\|Ga0066678_10230963	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → unclassified Chthoniobacterales → Chthoniobacterales bacterium	1191	Open in IMG/M
3300005445\|Ga0070708_100529062	All Organisms → cellular organisms → Bacteria → Acidobacteria	1112	Open in IMG/M
3300005454\|Ga0066687_10078338	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae	1618	Open in IMG/M
3300005467\|Ga0070706_100003539	All Organisms → cellular organisms → Bacteria	15353	Open in IMG/M
3300005471\|Ga0070698_100000134	All Organisms → cellular organisms → Bacteria	65298	Open in IMG/M
3300005471\|Ga0070698_100048088	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes	4359	Open in IMG/M
3300005518\|Ga0070699_100326737	All Organisms → cellular organisms → Bacteria	1379	Open in IMG/M
3300005569\|Ga0066705_10170984	All Organisms → cellular organisms → Bacteria → Acidobacteria	1346	Open in IMG/M
3300006173\|Ga0070716_100519375	All Organisms → cellular organisms → Bacteria → Acidobacteria	882	Open in IMG/M
3300006797\|Ga0066659_10151121	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1651	Open in IMG/M
3300006914\|Ga0075436_101000611	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	627	Open in IMG/M
3300007255\|Ga0099791_10590832	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	542	Open in IMG/M
3300009088\|Ga0099830_11497941	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	562	Open in IMG/M
3300009089\|Ga0099828_10221818	All Organisms → cellular organisms → Bacteria → Acidobacteria	1690	Open in IMG/M
3300010401\|Ga0134121_10013604	All Organisms → cellular organisms → Bacteria → Acidobacteria	6469	Open in IMG/M
3300011269\|Ga0137392_11050248	All Organisms → cellular organisms → Bacteria → Acidobacteria	669	Open in IMG/M
3300011271\|Ga0137393_10521092	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1020	Open in IMG/M
3300011414\|Ga0137442_1000001	All Organisms → cellular organisms → Bacteria	264199	Open in IMG/M
3300011428\|Ga0137456_1058704	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	932	Open in IMG/M
3300011431\|Ga0137438_1051458	All Organisms → cellular organisms → Bacteria → Acidobacteria	1223	Open in IMG/M
3300012096\|Ga0137389_10700613	All Organisms → cellular organisms → Bacteria → Acidobacteria	870	Open in IMG/M
3300012202\|Ga0137363_10001077	All Organisms → cellular organisms → Bacteria	15443	Open in IMG/M
3300012202\|Ga0137363_10097858	All Organisms → cellular organisms → Bacteria → Acidobacteria	2223	Open in IMG/M
3300012202\|Ga0137363_10583644	All Organisms → cellular organisms → Bacteria	943	Open in IMG/M
3300012202\|Ga0137363_11737943	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	516	Open in IMG/M
3300012203\|Ga0137399_10222629	All Organisms → cellular organisms → Bacteria → Acidobacteria	1539	Open in IMG/M
3300012203\|Ga0137399_10902931	All Organisms → cellular organisms → Bacteria → Acidobacteria	744	Open in IMG/M
3300012205\|Ga0137362_10047323	All Organisms → cellular organisms → Bacteria → Acidobacteria	3489	Open in IMG/M
3300012205\|Ga0137362_10471668	All Organisms → cellular organisms → Bacteria → Acidobacteria	1086	Open in IMG/M
3300012208\|Ga0137376_10542657	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1008	Open in IMG/M
3300012208\|Ga0137376_11667232	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → unclassified Pyrinomonadaceae → Pyrinomonadaceae bacterium	528	Open in IMG/M
3300012211\|Ga0137377_11169345	Not Available	699	Open in IMG/M
3300012227\|Ga0137449_1006121	All Organisms → cellular organisms → Bacteria → Acidobacteria	2131	Open in IMG/M
3300012353\|Ga0137367_10209042	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1412	Open in IMG/M
3300012362\|Ga0137361_10486374	All Organisms → cellular organisms → Bacteria → Acidobacteria	1133	Open in IMG/M
3300012582\|Ga0137358_10097406	All Organisms → cellular organisms → Bacteria → Acidobacteria	1990	Open in IMG/M
3300012683\|Ga0137398_10104645	All Organisms → cellular organisms → Bacteria	1785	Open in IMG/M
3300012683\|Ga0137398_10174376	All Organisms → cellular organisms → Bacteria → Acidobacteria	1407	Open in IMG/M
3300012683\|Ga0137398_10892571	All Organisms → cellular organisms → Bacteria → Acidobacteria	620	Open in IMG/M
3300012683\|Ga0137398_11094808	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	549	Open in IMG/M
3300012685\|Ga0137397_10059213	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → Pyrinomonas → Pyrinomonas methylaliphatogenes	2761	Open in IMG/M
3300012685\|Ga0137397_10099566	All Organisms → cellular organisms → Bacteria → Acidobacteria	2130	Open in IMG/M
3300012685\|Ga0137397_10444161	All Organisms → cellular organisms → Bacteria → Acidobacteria	966	Open in IMG/M
3300012917\|Ga0137395_10069662	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2268	Open in IMG/M
3300012917\|Ga0137395_10429908	All Organisms → cellular organisms → Bacteria → Acidobacteria	947	Open in IMG/M
3300012918\|Ga0137396_10171716	All Organisms → cellular organisms → Bacteria → Acidobacteria	1586	Open in IMG/M
3300012923\|Ga0137359_10124245	All Organisms → cellular organisms → Bacteria → Acidobacteria	2291	Open in IMG/M
3300012923\|Ga0137359_10860989	All Organisms → cellular organisms → Bacteria → Acidobacteria	783	Open in IMG/M
3300012923\|Ga0137359_10885855	All Organisms → cellular organisms → Bacteria → Acidobacteria	770	Open in IMG/M
3300012925\|Ga0137419_10642146	All Organisms → cellular organisms → Bacteria → Acidobacteria	856	Open in IMG/M
3300012925\|Ga0137419_10741671	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	799	Open in IMG/M
3300012925\|Ga0137419_11030414	All Organisms → cellular organisms → Bacteria → Acidobacteria	683	Open in IMG/M
3300012925\|Ga0137419_11585042	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	556	Open in IMG/M
3300012927\|Ga0137416_10880738	All Organisms → cellular organisms → Bacteria → Acidobacteria	795	Open in IMG/M
3300012930\|Ga0137407_10317339	All Organisms → cellular organisms → Bacteria → Acidobacteria	1428	Open in IMG/M
3300012944\|Ga0137410_11471247	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	594	Open in IMG/M
3300012944\|Ga0137410_11882847	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	530	Open in IMG/M
3300015069\|Ga0167633_103198	All Organisms → cellular organisms → Bacteria	3122	Open in IMG/M
3300015167\|Ga0167661_1036612	All Organisms → cellular organisms → Bacteria → Acidobacteria	922	Open in IMG/M
3300015168\|Ga0167631_1000001	All Organisms → cellular organisms → Bacteria	729241	Open in IMG/M
3300015168\|Ga0167631_1087383	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	511	Open in IMG/M
3300015197\|Ga0167638_1018622	All Organisms → cellular organisms → Bacteria → Acidobacteria	1630	Open in IMG/M
3300015197\|Ga0167638_1104706	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	535	Open in IMG/M
3300015241\|Ga0137418_10062026	All Organisms → cellular organisms → Bacteria	3419	Open in IMG/M
3300015242\|Ga0137412_10875595	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	653	Open in IMG/M
3300015245\|Ga0137409_10303234	All Organisms → cellular organisms → Bacteria → Acidobacteria	1404	Open in IMG/M
3300018433\|Ga0066667_10815339	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	795	Open in IMG/M
3300018468\|Ga0066662_10160952	All Organisms → cellular organisms → Bacteria → Acidobacteria	1715	Open in IMG/M
3300018482\|Ga0066669_11127375	All Organisms → cellular organisms → Bacteria → Acidobacteria	708	Open in IMG/M
3300019883\|Ga0193725_1004655	All Organisms → cellular organisms → Bacteria	3969	Open in IMG/M
3300020010\|Ga0193749_1014847	All Organisms → cellular organisms → Bacteria → Acidobacteria	1522	Open in IMG/M
3300020012\|Ga0193732_1000003	All Organisms → cellular organisms → Bacteria	371570	Open in IMG/M
3300020062\|Ga0193724_1064623	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	768	Open in IMG/M
3300020170\|Ga0179594_10332565	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	576	Open in IMG/M
3300021086\|Ga0179596_10571482	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	574	Open in IMG/M
3300021363\|Ga0193699_10489919	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	503	Open in IMG/M
3300021432\|Ga0210384_10341705	All Organisms → cellular organisms → Bacteria → Acidobacteria	1348	Open in IMG/M
3300023046\|Ga0233356_1011427	All Organisms → cellular organisms → Bacteria → Acidobacteria	973	Open in IMG/M
3300024279\|Ga0247692_1025430	All Organisms → cellular organisms → Bacteria → Acidobacteria	907	Open in IMG/M
3300024330\|Ga0137417_1003146	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	522	Open in IMG/M
3300024330\|Ga0137417_1071759	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	512	Open in IMG/M
3300025910\|Ga0207684_10110650	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2351	Open in IMG/M
3300025910\|Ga0207684_10266138	All Organisms → cellular organisms → Bacteria → Acidobacteria	1479	Open in IMG/M
3300025922\|Ga0207646_11087530	All Organisms → cellular organisms → Bacteria → Acidobacteria	704	Open in IMG/M
3300025939\|Ga0207665_10293015	All Organisms → cellular organisms → Bacteria → Acidobacteria	1214	Open in IMG/M
3300026309\|Ga0209055_1040410	All Organisms → cellular organisms → Bacteria → Acidobacteria	2064	Open in IMG/M
3300026320\|Ga0209131_1002589	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → Pyrinomonas → Pyrinomonas methylaliphatogenes	12267	Open in IMG/M
3300026320\|Ga0209131_1040361	All Organisms → cellular organisms → Bacteria → Acidobacteria	2683	Open in IMG/M
3300026320\|Ga0209131_1258739	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	685	Open in IMG/M
3300027591\|Ga0209733_1052976	All Organisms → cellular organisms → Bacteria → Acidobacteria	1071	Open in IMG/M
3300027669\|Ga0208981_1078613	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	841	Open in IMG/M
3300027815\|Ga0209726_10106330	All Organisms → cellular organisms → Bacteria → Acidobacteria	1680	Open in IMG/M
3300027903\|Ga0209488_10125043	All Organisms → cellular organisms → Bacteria → Acidobacteria	1936	Open in IMG/M
3300028047\|Ga0209526_10299577	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1088	Open in IMG/M
3300028536\|Ga0137415_10373903	All Organisms → cellular organisms → Bacteria → Acidobacteria	1229	Open in IMG/M
3300028536\|Ga0137415_10689875	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	834	Open in IMG/M
3300029636\|Ga0222749_10654551	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	575	Open in IMG/M
3300030991\|Ga0073994_12035263	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	536	Open in IMG/M
3300031720\|Ga0307469_10259447	All Organisms → cellular organisms → Bacteria → Acidobacteria	1405	Open in IMG/M
3300031962\|Ga0307479_11643656	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	597	Open in IMG/M
3300032174\|Ga0307470_11067603	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium	647	Open in IMG/M
3300032180\|Ga0307471_103649412	All Organisms → cellular organisms → Bacteria → Acidobacteria	545	Open in IMG/M
3300034125\|Ga0370484_0000003	All Organisms → cellular organisms → Bacteria	650155	Open in IMG/M
3300034155\|Ga0370498_000038	All Organisms → cellular organisms → Bacteria	45809	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	99.08%
Host-Associated	Host-Associated	0.92%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	94.50%
Aquatic	Environmental → Aquatic	4.59%
Plants	Host-Associated → Plants	0.92%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	94.50%
Sediment	Environmental → Aquatic → Sediment	3.67%
Freshwater	Environmental → Aquatic → Freshwater	0.92%
Rhizosphere	Host-Associated → Plants → Rhizosphere	0.92%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	80.73%
Loam	Environmental → Terrestrial → Soil → Loam	11.93%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	3.67%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	1.83%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater	0.92%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	0.92%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	58.72%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	12.84%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	9.17%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	9.17%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	3.67%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	2.75%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	1.83%
Contaminated	Environmental → Aquatic → Freshwater → Groundwater → Contaminated	0.92%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	0.92%

Habitat	Taxonomy	Distribution
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	47.71%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	9.17%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	6.42%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	6.42%
Glacier Forefield Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Glacier Forefield Soil	5.50%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	4.59%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	4.59%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	4.59%
Soil	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil	3.67%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	2.75%
Untreated Peat Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Untreated Peat Soil	1.83%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater → Contaminated → Groundwater	0.92%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.92%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	0.92%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300005167	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_121	Environmental	Open in IMG/M
3300005178	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_137	Environmental	Open in IMG/M
3300005181	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_127	Environmental	Open in IMG/M
3300005445	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG	Environmental	Open in IMG/M
3300005454	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_136	Environmental	Open in IMG/M
3300005467	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG	Environmental	Open in IMG/M
3300005471	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG	Environmental	Open in IMG/M
3300005518	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG	Environmental	Open in IMG/M
3300005569	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_154	Environmental	Open in IMG/M
3300006173	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG	Environmental	Open in IMG/M
3300006797	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_108	Environmental	Open in IMG/M
3300006914	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5	Host-Associated	Open in IMG/M
3300007255	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_1	Environmental	Open in IMG/M
3300009088	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG	Environmental	Open in IMG/M
3300009089	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG	Environmental	Open in IMG/M
3300010401	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-1	Environmental	Open in IMG/M
3300011269	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4A metaG	Environmental	Open in IMG/M
3300011271	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4B metaG	Environmental	Open in IMG/M
3300011414	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT266_2	Environmental	Open in IMG/M
3300011428	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT615_2	Environmental	Open in IMG/M
3300011431	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT157_2	Environmental	Open in IMG/M
3300012096	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4B metaG	Environmental	Open in IMG/M
3300012202	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaG	Environmental	Open in IMG/M
3300012203	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaG	Environmental	Open in IMG/M
3300012205	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaG	Environmental	Open in IMG/M
3300012208	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_20_16 metaG	Environmental	Open in IMG/M
3300012211	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_40_16 metaG	Environmental	Open in IMG/M
3300012227	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT436_2	Environmental	Open in IMG/M
3300012353	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_80_16 metaG	Environmental	Open in IMG/M
3300012362	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_80_16 metaG	Environmental	Open in IMG/M
3300012582	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_20_16 metaG	Environmental	Open in IMG/M
3300012683	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz2.16 metaG	Environmental	Open in IMG/M
3300012685	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz1.16 metaG	Environmental	Open in IMG/M
3300012917	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk2.16 metaG	Environmental	Open in IMG/M
3300012918	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czcobulk3.16 metaG	Environmental	Open in IMG/M
3300012923	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_40_16 metaG	Environmental	Open in IMG/M
3300012925	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012927	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012930	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012944	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300015069	Arctic soil microbial communities from a glacier forefield, Russell Glacier, Kangerlussuaq, Greenland (Sample G4C, Ice margin, adjacent to proglacial lake	Environmental	Open in IMG/M
3300015167	Arctic soil microbial communities from a glacier forefield, Storglaci?ren, Tarfala, Sweden (Sample st-11b, vegetated hydrological feature)	Environmental	Open in IMG/M
3300015168	Arctic soil microbial communities from a glacier forefield, Russell Glacier, Kangerlussuaq, Greenland (Sample G4A, Ice margin, adjacent to proglacial lake)	Environmental	Open in IMG/M
3300015197	Arctic soil microbial communities from a glacier forefield, Russell Glacier, Kangerlussuaq, Greenland (Sample G6B, Proglacial plain, adjacent to northern proglacial tributary)	Environmental	Open in IMG/M
3300015241	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300015242	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300015245	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300018433	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_116	Environmental	Open in IMG/M
3300018468	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_111	Environmental	Open in IMG/M
3300018482	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_118	Environmental	Open in IMG/M
3300019883	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H2a2	Environmental	Open in IMG/M
3300020010	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L1s2	Environmental	Open in IMG/M
3300020012	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1s1	Environmental	Open in IMG/M
3300020062	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H2a1	Environmental	Open in IMG/M
3300020170	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad1_1_08_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300021086	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_1_08_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300021363	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L3c2	Environmental	Open in IMG/M
3300021432	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M	Environmental	Open in IMG/M
3300023046	Soil microbial communities from Shasta-Trinity National Forest, California, United States - GEON-SFM-MS	Environmental	Open in IMG/M
3300024279	Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK33	Environmental	Open in IMG/M
3300024330	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300025910	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025922	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025939	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300026309	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_110 (SPAdes)	Environmental	Open in IMG/M
3300026320	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_40cm (SPAdes)	Environmental	Open in IMG/M
3300027591	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M1 (SPAdes)	Environmental	Open in IMG/M
3300027669	Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA OM1_M1 (SPAdes)	Environmental	Open in IMG/M
3300027815	Subsurface groundwater microbial communities from S. Glens Falls, New York, USA - GMW46 contaminated, 5.4 m (SPAdes)	Environmental	Open in IMG/M
3300027903	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2 (SPAdes)	Environmental	Open in IMG/M
3300028047	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M1 (SPAdes)	Environmental	Open in IMG/M
3300028536	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300029636	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300030991	Metatranscriptome of forest soil microbial communities from Montana, USA - Site 5 -Soil GP-1A (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300031720	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515	Environmental	Open in IMG/M
3300031962	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515	Environmental	Open in IMG/M
3300032174	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_05	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300034125	Peat soil microbial communities from wetlands in Alaska, United States - Sheep_creek_tus_01_15	Environmental	Open in IMG/M
3300034155	Peat soil microbial communities from wetlands in Alaska, United States - Frozen_pond_05D_17	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
Ga0066672_101285512	3300005167	Soil	MTLTLIEEGLSEEEQLAQQRNPTVKCSWCGEIIRMDGDELVLAMCQACYERMLAEYVRMQQGDQPDSHASDR*
Ga0066688_105022082	3300005178	Soil	TLIEEGLSEEEQLAQQRNPTVKCSWCGEIIRMDGDELLLAMCQACYERMLAEYVRMQQGDQPDSHASDR*
Ga0066678_102309631	3300005181	Soil	MTLTLIEEGLSEEEQLAQQRNPTVKCSWCGEIIRMDGDELLLAMCQACYERMLAEYVRMQQGDQPDSHASDR*
Ga0070708_1005290622	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	MTFLQIEDALSDEEELAQQNGLTVKCSWCGEIIRLDGNELALAMCQGCYDGMLAEFLRAQQANHSPSHASDR*
Ga0066687_100783383	3300005454	Soil	MTLTLIEEGLSEEEQLAQQRNPTVKCSWCGEIIRMDGDELLLAMCQACYERMLAEYVRMQQGDQPDSPASDR*
Ga0070706_1000035397	3300005467	Corn, Switchgrass And Miscanthus Rhizosphere	MTFLQIEDALSDEEELAQQNGLTVKCSWCGEIIRLDGNELALAMCQGCYDRMLAEFLRAQQANHSPSHASDR*
Ga0070698_10000013411	3300005471	Corn, Switchgrass And Miscanthus Rhizosphere	MTFLMIEDALSDEAELAQQNQLTVKCSWCGEIIRLDGKELALAMCPACYERMLAEFLLAQQMNQPDSHASDR*
Ga0070698_1000480885	3300005471	Corn, Switchgrass And Miscanthus Rhizosphere	MTLTLIEEGLSEEEQLAQQRNPTVKCSWCGEIIRMDGDELVLAMCQECYERMLAEYVRIQQGDQPDSHASDR*
Ga0070699_1003267373	3300005518	Corn, Switchgrass And Miscanthus Rhizosphere	MTLLQIEDALTDEEELAQQPRLTVKCSWCGEIIRLDGNELALAMCEACYERMLAEFLRAQQMNQPSTHASDR*
Ga0066705_101709842	3300005569	Soil	MTLTLIEEGLSEEEQLAQQRNPTVKCSWCGEIIRMDGDELLLAMCQACYERMLAEYVRMQQRDQPDSHASDR*
Ga0070716_1005193752	3300006173	Corn, Switchgrass And Miscanthus Rhizosphere	MTYLMIEDALSDAEELAQKEGLSVKCSWCGEIIRLNGQELALAMCQACYERMLAEFLQAQQMHQPDSNASER*
Ga0066659_101511213	3300006797	Soil	MTLTLIEEGLSEEQLAQQRNPTVKCSWCGEIIRMDGDELLLAMCQACYERMLAEYVRMQQGDQPDSHASDR*
Ga0075436_1010006112	3300006914	Populus Rhizosphere	MTLTLIEGGLSEAEQLAQQRNPTVKCSWCGEIIRMDGDELVLAMCQECYERMLSEYVRIQQGDQPDSHASDR*
Ga0099791_105908321	3300007255	Vadose Zone Soil	MTILQIEDALTDEEELAQQNGLTVKCSWCGEIIHLEGKELALAMCQACYERMLAEFLRAQQMNQPDSHASDR*
Ga0099830_114979412	3300009088	Vadose Zone Soil	MTILQIEDALTDEEELAQQNGPTVKCSWCGEIIHLEGKELALAMCQACYERMLAEFLRAQQMNQPDSHASDR*
Ga0099828_102218182	3300009089	Vadose Zone Soil	MTFIEIEDAATVEAEPGEQTHQTIKCSWCGEIIRLDGNELAPAMCQACYERMLEEFVRIQQINQTATHHSDR*
Ga0134121_100136044	3300010401	Terrestrial Soil	MIEDALSDAEELAQKNGLTVKCSWCGEIIRLDGKELALAMCQGCYERMLAEFLRAQQMHQPDSNASDR*
Ga0137392_110502482	3300011269	Vadose Zone Soil	MIEDALSDEEEIAQRNGLTVKCSWCGEIIHLDGKELALAMCQACYEQMLAEFLRAQEMNQPDTNASDR*
Ga0137393_105210921	3300011271	Vadose Zone Soil	MTILQIEDALTDQEELAQQNGPTVKCSWCGEIIHLEGKELALAMCQACYERMLAEFLRAQQMNQPDSHASDR*
Ga0137442_1000001171	3300011414	Soil	MTLLQIEDALSDEEELAQRNGLTVKCSWCGEIIQLDGKELALAMCQACYERMLAEFLRAQQMNQPDSHASDR*
Ga0137456_10587041	3300011428	Soil	MTLLQIEDALTDEEELAQQNGLTVKCSWCGEIIQLDGKELALAMCQTCYERMLAEFLRAQQMNQPDSHASDR*
Ga0137438_10514582	3300011431	Soil	MTFMMIEDALSDEELALPDSGSVKCSWCGEMILPAGKELTLAMCQACYERMLAEFLRGQQMKEADSHASDR*
Ga0137389_107006131	3300012096	Vadose Zone Soil	TFLQIEDALSDEEELAQQNGLTVKCSWCGEIIRLDGNELALAMCQNCYDGMLAEFLRSQQAKRTPSHASDG*
Ga0137363_100010775	3300012202	Vadose Zone Soil	MIEDALSDEEELAQKNGLTVKCSWCGEIIHLDGKELALAMCQACYERMLAEFLLAQQMHQPDSNASDR*
Ga0137363_100978582	3300012202	Vadose Zone Soil	MIEDAPSDEEEIAQRNGLTVKCSWCGEIIHLDGKELALAMCQGCYEQMLAEFLRAQQMNQADDHASER*
Ga0137363_105836443	3300012202	Vadose Zone Soil	MIEEAPSDEEEIAHRSGLTVKCSWCGEIIHLDGKELALAMCQACYEQMLAEFLRAQQMNQADTNPTDR*
Ga0137363_117379431	3300012202	Vadose Zone Soil	MTLTLIEEGLSEEEQLAQQRNPAVKCSWCGEIIRMDGDELVLAMCQACYERMLAEYVRMQQRDQPDSHASDR*
Ga0137399_102226292	3300012203	Vadose Zone Soil	MTILQIEDALTDEEELAQQNGLTVKCSWCGEIIHLEGQELALAMCQGCYERMLAEFLRAQHMNHPDSHASDR*
Ga0137399_109029312	3300012203	Vadose Zone Soil	MIEDALSDEEEIAQRNGLTVKCSWCGEIIHLDGKELALAMCQACYEQMLAEFLRAQQMNQPDANASDR*
Ga0137362_100473233	3300012205	Vadose Zone Soil	MTLTLIEEGLSEEEQLAQQRNPTVKCSWCGEIIRMDGDELVLAMCQACYERMLAEYVRMQQRDQPDSHASDR*
Ga0137362_104716681	3300012205	Vadose Zone Soil	MTFLVIEDALSDEDELAQQTGLTVKCSWCGEIIQLDGKERALAMCQGCYERMLAEFLRAQQMNDANASER*
Ga0137376_105426572	3300012208	Vadose Zone Soil	VADAFDLSGKEARGLEVYRSFEETIAMTFLMIEDALSDEEELAQQNGLTVKCSWCGEIIRLDGKELAPAMCQGCYERMLAEFLRAQQMNQPDSHASDQ*
Ga0137376_116672322	3300012208	Vadose Zone Soil	LMIEDALSDAEELAQKNGLTVKCSWCGESIRLDGKELALAMCQACYERMLAEFLRAQQMSQPDSNASDR*
Ga0137377_111693452	3300012211	Vadose Zone Soil	TSLKSRFKLTGKTDMTLTLIEEGLSEEEQLAQQRNPTVKCSWCGEIIRMDGDELVLAMCQACYERMLAEYVRMQQGDQPDSHASDR*
Ga0137449_10061213	3300012227	Soil	MTLLQIEDALTDEEELAQQNGLTVKCSWCGEMIQLDGKELALAMCQTCYERMLAEFLRAQQMNQPDSHASDR*
Ga0137367_102090422	3300012353	Vadose Zone Soil	MTLLQIEDATTDEEELAQRNGLTVKCSWCGEIVRLDGNELALAMCETCYERMLAEFLRAQQMNQRDSHASDR*
Ga0137361_104863741	3300012362	Vadose Zone Soil	MTYLLIEDALSDDEEIAQRNGQTVKCSWCGEIIHLDGKELALAMCQACYEQMLAEFLRAQQMNQA
Ga0137358_100974063	3300012582	Vadose Zone Soil	MIEDALSDEEEISQRNGLTVKCSWCGEIIHLDGKELALAMCQGCYEQMLAEFLRAQQMNQPDTNASDR*
Ga0137358_108844091	3300012582	Vadose Zone Soil	IGEVAEMTFIEIEDALPDQREELGSGADLTVKCSWCGEIIHLHGQELALAMCQACYERMLADFVRAQQTREPFDHASDR*
Ga0137398_101046454	3300012683	Vadose Zone Soil	MIEDAPSDEEKIAQRNGLTVKCSWCGEIIHLDGKELALAMCQGCYEQMLAEFLRAQQMNQADTNASDR*
Ga0137398_101743763	3300012683	Vadose Zone Soil	MIEDAPSDEEEIAQRNGLTVKCSWCGEIIHLDGKDLALAMCQACYEQMLAEFLRAQQMNQPDSHASER*
Ga0137398_108925711	3300012683	Vadose Zone Soil	MGGVFDMTFIEIEDDLPDQREELTSETGLTVKCSWCGEIIHLDGQELALAMCQACYERMLADFLQAQQTKQAPTHASDR*
Ga0137398_110948082	3300012683	Vadose Zone Soil	MIEDALSDEEEMTQRNGLTVKCSWCGEIIHLDGKELALAMCQGCYEQMLAEFLRAQQMNQADDHASER*
Ga0137397_100592133	3300012685	Vadose Zone Soil	MIEDAPSDEEEIAQRNGLTVKCSWCGEIIHLDGKELALAMCQTCYEQMLAEFLRAQQMNQPDDHASER*
Ga0137397_100995663	3300012685	Vadose Zone Soil	MEDALTDEEELAQQNGLTVKCSWCGAIIHLEGKELALAMCQACYERMLAEFLRAQQMNQPDSHASDR*
Ga0137397_104441612	3300012685	Vadose Zone Soil	MTLLEIEDARSDEEELAQGHGLTVKCSWCGEIIDLQGKELALAMCGSCYERMLAEFLRAQQTNQPSSHTSDR*
Ga0137395_100696621	3300012917	Vadose Zone Soil	QDRGTNVMTYLMIEDALSDEEEIAQRNGQTVKCSWCGEIIQLDGKELALAMCQGCYEQMLEEFLPAQQMNQPDDHASER*
Ga0137395_104299082	3300012917	Vadose Zone Soil	MIEDALSDEEEISQRNGLTVKCSWCGEIIHLDGKELALAMCQACYEQMLAEFLRAQQMNQADPNASDR*
Ga0137396_101717163	3300012918	Vadose Zone Soil	MTYLLIEDALSDEEELAHRNGQTVKCSWCGEIIQLDGKELALAMCQGCYEQMLAEFLRAQQMNQADYNASDR*
Ga0137359_101242453	3300012923	Vadose Zone Soil	MIEDALSDEEELAQQNGLTVKCSWCGEIIRLDGKELALAMCQPCYEGMLAEFLRAQQMHQVDSNASDR*
Ga0137359_108609891	3300012923	Vadose Zone Soil	REELTTETGLTVKCSWCGEIIHLDGQELALAMCQGCYERMLADFLQAQQTKEAPTHASDR
Ga0137359_108858552	3300012923	Vadose Zone Soil	MIEDALSGADELAQKTGLTLKCSWCGEIIQLDGKELALAMCQGCYEEMLAEFLRAQQISRSDRNASDR*
Ga0137419_106421462	3300012925	Vadose Zone Soil	MIEDALSDAEELAQKTGLTVKCSWCGEIIQLHGKELALAMCQGCYEEMLAEFLRAQQISRSDSNASDR*
Ga0137419_107416712	3300012925	Vadose Zone Soil	MTLLQIEDALTDEEELAQQNGVTVKCSWCGEIIHADGKELALAMCQACYERMLAEFLRAQQMNEPDVHASDR*
Ga0137419_110304142	3300012925	Vadose Zone Soil	MIEDALSDEEEIAHRNGQTVKCSWCGEIIHLDGKELALAMCQGCYEQMLAEFLRAQQMNQADYNASDR*
Ga0137419_115850422	3300012925	Vadose Zone Soil	MIEDALSDEEEIAQRNGLTVKCSWCGEIIHLDGKELALAMCQACYEQMLAEFLRAQQMNQADTNASDR*
Ga0137416_108807381	3300012927	Vadose Zone Soil	MTFIEIEDALPDQREELATGAGLTVKCSWCGEIIHLHGQELALAMCQACYERMLADFLRAQQMKQPFDHASDR*
Ga0137407_103173394	3300012930	Vadose Zone Soil	MIEDALSDAEELAQKNGLTVKCSWCGEIIRLDGKELALAMCQVCYERMLAEFLRAQQMHRPDSNASDR*
Ga0137410_114712471	3300012944	Vadose Zone Soil	MIEDALSDAEELAQKNGLTVKCSWCGEIIRLDGKELALAMCQVCYERMLAEFLRAQQMHQPDDNASDR*
Ga0137410_118828471	3300012944	Vadose Zone Soil	LNSYRGAEETNPMTFLMIEDAPPDEAELAQQNQLSVKCSWCGEIIRLDGRELALAMCQACYEGMLEKFLRAQQMHRPDSNASDR*
Ga0167633_1031982	3300015069	Glacier Forefield Soil	MTFLMIEDALSDEEELAQQNGLTVKCSWCGEIIRLDGKELALAMCQACYERMLAEFLHAQLMKQPDSHASDR*
Ga0167661_10366122	3300015167	Glacier Forefield Soil	MTFIEIEDAVPDQREELLLANNLTLKCSWCGQIIQLHGEELALAMCQGCYQQMLADFVRAQQMRQPATHASDR*
Ga0167631_1000001132	3300015168	Glacier Forefield Soil	MTLLQIEDALTDEEELALRSGLTVKCSWCGEIIQLHGKELALAMCQVCYERMLAEFLRAQQANQAPRHASDR*
Ga0167631_10873832	3300015168	Glacier Forefield Soil	MIEDALTDEEELAEQTGLTVKCSWCGEIIRLNGKELALAMCQTCYERMLSEFLQAQQAKQTDSHASYR*
Ga0167638_10186222	3300015197	Glacier Forefield Soil	MTLLQIEDALTDEEEIAQQSAPTVKCSWCGEIIQLAGKELTLAMCQACYERMLAEFLRAQQVNQPSSHVSDR*
Ga0167638_11047061	3300015197	Glacier Forefield Soil	MTLLQIQDALSDEEQLGELAGLAVKCSWCGEIIRLDGRELALAMCQTCYERMLAEYLRTQHENNASRDASDR*
Ga0137418_100620264	3300015241	Vadose Zone Soil	MIEDALSDAEELAQKTGLTVKCSWCGEIIQLHGKELALAMCQACYEQMLAEFLRAQQMNQADYNASDR*
Ga0137412_108755951	3300015242	Vadose Zone Soil	MIEDALSDAEELAQKNGLTVKCSWCGEIIRLDGKELALAMCQVCYERMLAEFLRAQQTHRPDSNASDR*
Ga0137409_103032343	3300015245	Vadose Zone Soil	MIEDALSDAEELAQKNGLTVKCSWCGEIIRLDGKELVLAMCQVCYERMLAEFLRAQQTHQPDSNASDR*
Ga0066667_108153392	3300018433	Grasslands Soil	MTLTLIEEGLSEEEQLAQQRNPTVKCSWCGEIIRMDGDELVLAMCQACYERMLAEYVRMQQGDQPDSHASDR
Ga0066662_101609522	3300018468	Grasslands Soil	LIEEGLSEEEQLAQQRNPTVKCSWCGEIIRMDGDELLLAMCQACYERMLAEYVRMQQGDQPDSHASDR
Ga0066669_111273752	3300018482	Grasslands Soil	MTYLMIEDALSDEEELAQQNQLTVKCSWCGEIIRLHGQELALAMCQACYERMLAEFLRAQQMNQPDSHASDR
Ga0193725_10046554	3300019883	Soil	MGGVHAMTLLQIEDALSDEEELAQQTGLTVKCSWCGDMIRLDGNDLALAMCEACYERMLAEFLRAQQMNQPSTHASDR
Ga0193749_10148472	3300020010	Soil	MTFLMIEDALSDEDELAQPTGRTVKCSWCGEIIQLDGKELALAMCQGCYERMLAEFLQAQQMNQPSDHASDR
Ga0193732_1000003239	3300020012	Soil	MTFLLIEDALSDEEELAQENGLTVKCSWCGEIIRLDGKELALAMCQGCYARMLAEFLRAQQMNQPDSHASDR
Ga0193724_10646233	3300020062	Soil	MTFMMIEDALTDEEQAAQPDGQTVKCSWCGEIIRLDGKELALAMCQACYERMLAEFLQAQQIKQADDHASDR
Ga0179594_103325651	3300020170	Vadose Zone Soil	MTFLMIEGVLSDEDELAQQTGLTVKCSWCGEIIQLDGKELALAMCQACYEQMLAEFLRAQQMNQADTNASDR
Ga0179596_105714821	3300021086	Vadose Zone Soil	VMTYLMIEDALSDEEEIAQRNGLTVKCSWCGEIIHLDGKELALAMCQGCYEQMLAEFLRAQQMNQPDTNASDR
Ga0193699_104899192	3300021363	Soil	MTFMTIEDALTDEEEVAQQNNQTVKCSWCGEIIRLSGKELALAMCQVCYEQMLAEFLRAQQMSQPDSHASDR
Ga0210384_103417052	3300021432	Soil	MTLLQIEDALPDEKELAQQTGLTVKCSWCGEIIHLDGKELALAMCQSCYERMLAEFLQAQQMNQPSTHASDR
Ga0233356_10114271	3300023046	Soil	MTFMMIEDALTDEEELAQQNNQTIKCSWCGEIIRLEGKELALAMCQACYDQMLAEFLRAQQMHQPDSHASDR
Ga0247692_10254301	3300024279	Soil	MTYLMIEDALSDAEELAQKNGLTVKCSWCGEIIRLDGKELALAMCQVCYERMLAEFLRAQQMHQPDSNASDR
Ga0137417_10031462	3300024330	Vadose Zone Soil	MTYLMIEDALSDEEEIAQRNGLTVKCSWCGEIIHLDGKELALAMCQACYEQMLAEFLRAQQMNQADTNASDR
Ga0137417_10717592	3300024330	Vadose Zone Soil	MTYLMIEDALSDEEQIAQRNGLTVKCSWCGEIIHLDGKELALAMCQACYEQMLAEFLRAQQMNQADTNASDR
Ga0207684_101106502	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	MTFLQIEDALSDEEELAQQNGLTVKCSWCGEIIRLDGNELALAMCQGCYDRMLAEFLRAQQANHSPSHASDR
Ga0207684_102661383	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	MTYLMIEDALSDAEELAQKNGLTVKCSWCGEIIRLDGKELALAMCQACYERMLAEFLRAQQMHQPDSNASDR
Ga0207646_110875302	3300025922	Corn, Switchgrass And Miscanthus Rhizosphere	MTFLQIEDALSDEEELAQQNGLTVKCSWCGEIIRLDGNQLALAMCRQCYDRMLAEFLEQQMNHDTTHAS
Ga0207665_102930152	3300025939	Corn, Switchgrass And Miscanthus Rhizosphere	MTYLMIEDALSDAEELAQKEGLSVKCSWCGEIIRLNGQELALAMCQACYERMLAEFLQAQQMHQPDSNASER
Ga0209055_10404102	3300026309	Soil	MTLTLIEEGLSEEEQLAQQRNPTVKCSWCGEIIRMDGDELLLAMCQACYERMLAEYVRMQQGDQPDSHASDR
Ga0209131_10025897	3300026320	Grasslands Soil	MTYLMIEDAPSDEEEIAQRNGLTVKCSWCGEIIHLDGKELALAMCQGCYEQMLAEFLRAQQMNQADTNASDR
Ga0209131_10403613	3300026320	Grasslands Soil	MTFLVIEDALSDEDELAQQTGLTVKCSWCGEIIQLDGKERALAMCQGCYERMLAEFLRAQQMNDANASER
Ga0209131_12040441	3300026320	Grasslands Soil	PDLFGRGRQTRGLIIRTRMGGVFDMTFIEIEDDLPDQREELTSETGLTVKCSWCGEIIHLDGQELALAMCQGCYERMLADFLRAQQTKEAPTHASDR
Ga0209131_12587392	3300026320	Grasslands Soil	MTFLMIEDALSDEDELAQQTGLTVKCSWCGEIIQLDGKELALAMCQGCYERMLAEFLRAQQLNDPHASER
Ga0209733_10529761	3300027591	Forest Soil	MTLLQIEDALTDDEELAQQNGLTVKCSWCGEIIQLDGKELALAMCQACYERMLAEFLRAQQMNQPSSNASDR
Ga0208981_10786132	3300027669	Forest Soil	MTYLMIEEALSDAEELAQKTGLTVKCSWCGEIIQLDGKELALAMCQACYDGMLAEFLRAQQLPRPDSDASDR
Ga0209726_101063303	3300027815	Groundwater	MTYLMIEDALSDEEELAQNAGLTVKCSWCGEIIQLDGKELALAMCQACYERMLGEFLLAQQMHQPDSHASDR
Ga0209488_101250434	3300027903	Vadose Zone Soil	MTYLMIEDAPSDEEKIAQRNGLTVKCSWCGEIIHLDGKELALAMCQGCYEQMLAEFLRAQQMNQADTNASDR
Ga0209526_102995772	3300028047	Forest Soil	MTLLQIEDALSDEEELAQQTGLTVKCSWCGEIIRLDGNELALAMCEACYERMLAEFLRTQQMNQPSTHASDR
Ga0137415_103739033	3300028536	Vadose Zone Soil	MTYLMIEDALSDAEELAQKTGLTVKCSWCGEIIQLHGKELALAMCQGCYEEMLAEFLRAQQIS
Ga0137415_106898751	3300028536	Vadose Zone Soil	LRSVLGETPRSRGREKMTILQIEDALTDEEELAQQNGLTVKCSWCGEIIHLEGKELALAMCQACYERMLAEFLRAQQMHQPDSHASDR
Ga0222749_106545512	3300029636	Soil	MTLLQIEDALPDEKELAQQTGLTVKCSWCGEIIHLDGKELALAMCQSCYERMLAEFLQAQQMNQPSTHASD
Ga0073994_120352631	3300030991	Soil	MTILQIEDALTDEEELAQQNGLTVKCSWCGEIIHLQGQELALAMCQACYERMLAEFLRAQQMNHPDSHASDR
Ga0307469_102594472	3300031720	Hardwood Forest Soil	MTLLQIEDALSDEEELAQQTGLTVKCSWCGDIIRLDGNELALAMCEACYERMLAEFLRAQQMNQPSTHASDR
Ga0307479_116436562	3300031962	Hardwood Forest Soil	MTYLMIEDALSDEEELAQKNGLTVKCSWCGEIIRLDGKELALAMCQACYEGMLAEFLRAQQMHQPDGNASDR
Ga0307470_110676032	3300032174	Hardwood Forest Soil	MTLLQIEDALSDEDELAQQTGMTVKCSWCGEIIRLDGSELALAMCGACYERMLAEFLRAQ
Ga0307471_1026987161	3300032180	Hardwood Forest Soil	KRKASARLDYPFVEIGEVTEMTFIEIEDAPPDQREELASGADLTVKCSWCGEIIHLHGQELALAMCQACYERMLADFVRAQQTKAPFNYASDR
Ga0307471_1036494121	3300032180	Hardwood Forest Soil	MTLLQIDDALTDEEELAQQTGLTVKCSWCGDIIRLDGNELAPAMCEACYERMLAEFLRAQ
Ga0370484_0000003_528605_528823	3300034125	Untreated Peat Soil	MTLLQIEDALSDEEELAQQNGLTVKCSWCGEIIQLDGKELTLAMCQVCYERMLAEFLRAQQMNQPSSHASDR
Ga0370498_000038_14281_14499	3300034155	Untreated Peat Soil	MTLLQIEDALTDEEELALQNGLMVKCSWCGEIIQLDGKELALAMCQTCYERMLAEFLRAQQMNQPDSHASDR

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F089338

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences