NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334964_000224

Scaffold Ga0334964_000224


Overview

Basic Information
Taxon OID3300034146 Open in IMG/M
Scaffold IDGa0334964_000224 Open in IMG/M
Source Dataset NameSub-biocrust soil microbial communities from Mojave Desert, California, United States - 60SNS
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)33715
Total Scaffold Genes37 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)20 (54.05%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Desert → Sub-Biocrust Soil → Soil And Biocrust Microbial Communities From Mojave Desert, California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)34.3778Long. (o)-117.6098Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F020065Metagenome226Y
F068101Metagenome / Metatranscriptome125Y

Sequences

Protein IDFamilyRBSSequence
Ga0334964_000224_16102_16389F068101GAGMDFEDDPIRERAAALGQRMVENGPEALFDEIEGLLPDSWRDHIRTFPIAAVALGVGAGIWLGMKKSDEIIAAGTTLVSTAAMANVAQVMDKVKGQ
Ga0334964_000224_20492_20665F020065AGAAGMKKSQIQQIKEGRAMREKVWSGRLQPYGPRVDLRTENAVKLTTIPSSAEEKYKGGQE

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