Scaffold Ga0334959_016614

Overview

Basic Information

• Taxon OID: 3300034142
• Scaffold ID: Ga0334959_016614
• Source Dataset Name: Biocrust microbial communities from Mojave Desert, California, United States - 55SNC
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1136
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Oscillatoriophycideae → Oscillatoriales → Microcoleaceae → Tychonema → unclassified Tychonema → Tychonema sp. LEGE 06208 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Soil Crust → Unclassified → Biocrust → Soil And Biocrust Microbial Communities From Mojave Desert, California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 34.3778
  • Long. (^o): -117.6098

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006886	Metagenome / Metatranscriptome	362	Y
F069716	Metagenome	123	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334959_016614_1_537	F069716	AGCAGG	MLANKNQAIVSGLLGLGVAGLAVATALPFNDRIEYRIGNRIESQPAWLVPPKAEFRAIKRGYGGIKILLALLGTGGMITVMLIARREGEQEPVRQRIKQYQNQAYEFGFAAEAAYQMATTQTRYKKLAEADEVAFEDEIEQAYCESLGIDPQQQQAALTGTTTLESVADPSDKVQGGTS
Ga0334959_016614_524_988	F006886	N/A	MYQDFDASEFDYLNSATPQQFEQQTKTQTPEVTNIERFWNLTGNWGEFGSYFGAGLSASLIVRAIPTLIPAALILIPASGLGLALYSLSAEGAGKVRAQLILLAIGTALLSANWDGWLAWIVANSQLLIFSFLVVVIVLGFVGTQIWSRLNVSQ