Scaffold Ga0334955_001164

Overview

Basic Information

• Taxon OID: 3300034138
• Scaffold ID: Ga0334955_001164
• Source Dataset Name: Biocrust microbial communities from Mojave Desert, California, United States - 51SNC
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10021
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (36.36%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Cyanophyceae (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Soil Crust → Unclassified → Biocrust → Soil And Biocrust Microbial Communities From Mojave Desert, California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 34.3778
  • Long. (^o): -117.6098

Associated Families

Family	Category	Number of Sequences	3D Structure?
F017778	Metagenome / Metatranscriptome	238	Y
F044877	Metagenome / Metatranscriptome	153	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0334955_001164_1725_2027	F044877	N/A	MVTLDHKTLEEIFSLIGDCVDTIINLRHSGVFITSAKRCLLDTGNLELASSTEVSEAALLLDTWLDVVPKSHKEMDAWLQQANAITYLALAPLKLGKSNG
Ga0334955_001164_9242_9703	F017778	N/A	MAKGKTKGKRGGIRPGAGNPYKWKHGETKPVRLPIVLIPKILEIAQLIDGQEYINRVEHEFDDEEGSPKYYNGYYAGQLMYLRIGNDELASEVRNLRKENEVLKAQLMELNNGVLPEPLPDFSNLLFVSEPKPLAKQDRRKKRKGTFFVEKQV