Scaffold Ga0370484

Basic Information
Taxon OID	3300034125 Open in IMG/M
Scaffold ID	Ga0370484_0000003 Open in IMG/M
Source Dataset Name	Peat soil microbial communities from wetlands in Alaska, United States - Sheep_creek_tus_01_15
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300034125 Open in IMG/M

Scaffold ID

Ga0370484_0000003 Open in IMG/M

Source Dataset Name

Peat soil microbial communities from wetlands in Alaska, United States - Sheep_creek_tus_01_15

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	650155
Total Scaffold Genes	600 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	342 (57.00%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (66.67%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

650155

Total Scaffold Genes

600 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

342 (57.00%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (66.67%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Untreated Peat Soil → Peat Soil Microbial Communities From Wetland Fen In Alaska, United States

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Wetlands → Unclassified → Untreated Peat Soil → Peat Soil Microbial Communities From Wetland Fen In Alaska, United States

Source Dataset Sampling Location
Location Name	USA: Alaska
Coordinates	Lat. (^o)	64.9095	Long. (^o)	-147.9448	Alt. (m)	Depth (m)	0
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Alaska

Coordinates

Lat. (^o)

64.9095

Long. (^o)

-147.9448

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001368	Metagenome	713	Y
F008187	Metagenome	337	Y
F011244	Metagenome	293	Y
F054732	Metagenome	139	Y
F086047	Metagenome / Metatranscriptome	111	Y
F089338	Metagenome / Metatranscriptome	109	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0370484_0000003_146133_146678	F008187	AGGAG	MMRIRYVVFLATLILWLVPVNFSRPVAATATPTANTVYLFVEVETKVYRKDVPVSSEHPSERRWYFSNVIVQPMDVPTYSLIKQKIMPYFSRNVMDPFEARGFSLDYGEQDVRLNGESSYANYETREQAEEQRKKELEMRKGQSGNIYSFELVLGPAKGEETSKPKLIYRDKEQPNYGDA
Ga0370484_0000003_169946_170155	F011244	N/A	MLSMSSTDELNRKLRELDAEFDREMLARGFDPAQAENVALPARLAALYSERERIKAELEEAEGKTDDRD
Ga0370484_0000003_253595_254155	F054732	N/A	MKDLRLMLRQGCVAIWLVTLFSLPANAAPRLEQPPAGVVVFFDVSDLPARIDEPRLSESDGEFVLDGAVANRSGEPLLGIRLILLVIDPAGKLRSRITWTERSELAMYSIKTFAFHPPITGEIRKSDQLFLAIDEVIGHETIWRVVGAEKALRAYSRGQHDVLPTVRTVANQFDPRTQPLMMRVIH
Ga0370484_0000003_528605_528823	F089338	AGGA	MTLLQIEDALSDEEELAQQNGLTVKCSWCGEIIQLDGKELTLAMCQVCYERMLAEFLRAQQMNQPSSHASDR
Ga0370484_0000003_541306_541551	F086047	GAGG	MHAEQIAFPFRTKRPDMRNNPSADLIGRSYVDGHAIITVASVCLNDDRRVMVERDLDGRTWSMPAWLMRLIFLEKNGKRAA
Ga0370484_0000003_89404_89769	F001368	GGAGG	MGRDSATTDRLRNLISKLKSLTKSSALHWEKQAGSAHRYARWNNNLVILGPSTPLSETSVSRYLFVTPFDSPNCIEVNSDDAELGPDVIKLVQEVESASKDESPTDPFAVTDQLLERLES

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0370484_0000003

Overview

Ecosystem & Geography

Associated Families

Sequences