Scaffold Ga0335058

Basic Information
Taxon OID	3300034121 Open in IMG/M
Scaffold ID	Ga0335058_0077684 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME19May2015-rr0174
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1936
Total Scaffold Genes	5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	4

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Moraxellales → Moraxellaceae → Acinetobacter → Acinetobacter baylyi	(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location Name	USA: Wisconsin
Coordinates	Lat. (^o)	43.0995	Long. (^o)	-89.4045	Alt. (m)	Depth (m)
Location on Map

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Family	Category	Number of Sequences	3D Structure?
F009600	Metagenome	315	Y
F011218	Metagenome / Metatranscriptome	293	N
F015723	Metagenome / Metatranscriptome	252	Y
F039112	Metagenome	164	Y

Family

Category

Number of Sequences

3D Structure?

Metagenome

315

Metagenome / Metatranscriptome

293

Metagenome / Metatranscriptome

252

Metagenome

164

Protein ID	Family	RBS	Sequence
Ga0335058_0077684_321_701	F009600	N/A	MRISDSRQLTYKIVVGKVPSLNAFYASKHWTARVKAKELVSKEVMSQLEKYDLQDIKDVHIHCKVNYRYDIDNAIMAVKFALDAFKTWGGVKDDSRKYVHSLKLVHDTTIPKDTAEITFTGLLVTE
Ga0335058_0077684_49_348	F011218	N/A	MTSARLSLTYNLNLNDKMSNDQRAKEAKQQQENMQYYTNPAKRRKIDFILEECATLMANCEADYNSRQQAKYKEQELLGEIAKIDLHFAIQCGYLIPDN
Ga0335058_0077684_736_876	F039112	N/A	MTLSFSSDVYTEMVQVQQAQIQALQNKVAELQARIETLEQQSILFI
Ga0335058_0077684_891_1331	F015723	N/A	MPKIISITPTGMWQDLHKLEIRFDTGDFGTAFAKSQTPPYAVGEEVEYTKNEKGTVKIQRPNPYGGSTGGGYTQSAPSFAPKGNDERSASIIRQVALKAAVEYGSAAKHDVNTILANAETFNAWMTGASAAPASHTEHFANRNDPF

Protein ID

Family

RBS

Sequence

Ga0335058_0077684_321_701

N/A

MRISDSRQLTYKIVVGKVPSLNAFYASKHWTARVKAKELVSKEVMSQLEKYDLQDIKDVHIHCKVNYRYDIDNAIMAVKFALDAFKTWGGVKDDSRKYVHSLKLVHDTTIPKDTAEITFTGLLVTE

Ga0335058_0077684_49_348

N/A

MTSARLSLTYNLNLNDKMSNDQRAKEAKQQQENMQYYTNPAKRRKIDFILEECATLMANCEADYNSRQQAKYKEQELLGEIAKIDLHFAIQCGYLIPDN

Ga0335058_0077684_736_876

N/A

MTLSFSSDVYTEMVQVQQAQIQALQNKVAELQARIETLEQQSILFI

Ga0335058_0077684_891_1331

N/A

MPKIISITPTGMWQDLHKLEIRFDTGDFGTAFAKSQTPPYAVGEEVEYTKNEKGTVKIQRPNPYGGSTGGGYTQSAPSFAPKGNDERSASIIRQVALKAAVEYGSAAKHDVNTILANAETFNAWMTGASAAPASHTEHFANRNDPF

NMPFamsDB