Scaffold Ga0335068_0016659

Overview

Basic Information

• Taxon OID: 3300034116
• Scaffold ID: Ga0335068_0016659
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-CONTROL-GENDONOR
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4569
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (50.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011077	Metagenome / Metatranscriptome	295	Y
F017788	Metagenome / Metatranscriptome	238	Y
F037701	Metagenome / Metatranscriptome	167	Y
F098668	Metagenome / Metatranscriptome	103	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0335068_0016659_1146_1292	F037701	GGA	MIRTKEWRISNRVWLGVGFAPRRIALGFSVDRFNANIDFLWFWVSLEY
Ga0335068_0016659_2966_3364	F017788	AGGA	MKKIIITSLLISLFMPVASVEATTKSLKTKANKASCKNIKVKYQSEIMSKWSNGFASDQDVLKEIELNIDMLVTGQKFTTGKVKTNIESWIIAEKNTKDALIKKNIEAITDAMNLKISSITKFDKLCKSIEK
Ga0335068_0016659_802_978	F098668	N/A	MKNISNLIAASGCFNLDEALRAVAELHIPEGTLVHRCQEDKKPWPCQTIKNIERELTK
Ga0335068_0016659_975_1133	F011077	GAG	MITDNLTWAEEENNVWKGWTYSLEKNRYYFDDVGNESLAAFWADEFLNQAYL