NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335063_0000845

Scaffold Ga0335063_0000845


Overview

Basic Information
Taxon OID3300034111 Open in IMG/M
Scaffold IDGa0335063_0000845 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME03Oct2011-rr0186
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)18011
Total Scaffold Genes31 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)24 (77.42%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F070855Metagenome122Y
F091589Metagenome107N

Sequences

Protein IDFamilyRBSSequence
Ga0335063_0000845_4276_6147F091589AGAAGGMANYKDAPLADQPQAGQPQAFTSVLGPGVPYSGPAEALRSIGQGLTFGTLDEIEAALRTGSISGPEYERQRNLLREQQKQFGQDMPIAKTGLEIGGSLIAPLGLARQVGRLAPSTQAAVIGQTVPGQIARGTAIGAATGAASGYGFAEKDAGTEAVVGGIFGGLLGGSVPIVVDKAGSLIKNVLNSAGIGDQETAASKMLASYLKKDNLTPTEAQQALDELRKIGVPNPVIADLGKSLNDLAYSAYVVQSKAKGGTESFLVNRMIDQPNDIVKGLVEKAGLAKNVNGFEYLEALTANQSRLASQAYPDAYSKAIDAVPFRKYVDRPVFQKAYEEAVKRAGVYGNKLPDLSAIRNAQAVPTDILHQIKIGLDRVIDAETDSVTGKVSGYGRDVTKVKTEFNDLIKSLNPEYAKANAQFADAERIKNAFKMGEDYQKLDPKEAASKIKKLNPDEKEAFRLGVMADVNNRLGNFKGGDFTKQIFKSENQKLLLRNAFPDQASYAEFSQYVKSLGQQSATKQRVLGGSRTDENRAVRDEANLLGSLAQATTTGDPLSMLRAGGQALLSRARGISSESSEALQKRLFTVDPIEQTTILRELNRRAQRPQTGLLTGSAAVGSATGILGD
Ga0335063_0000845_8021_8164F070855AGGAMKHHKYNQHYQVRAAKLHARAEAALSIALACFIGIGMAALLVAWWSS
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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