Scaffold Ga0335055_0078857

Overview

Basic Information

• Taxon OID: 3300034110
• Scaffold ID: Ga0335055_0078857
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME01Jun2009D10-rr0171
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1512
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011292	Metagenome / Metatranscriptome	292	Y
F019438	Metagenome	229	Y
F057982	Metagenome	135	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0335055_0078857_1185_1307	F019438	GGGGG	METVLTTIILGGIGFIVCGLVFVGLMHLWFWMDENERGNK
Ga0335055_0078857_478_681	F057982	AGGAG	MRYRITYSNGNYADWDSMQKELAWAYKWGVFLYAIRLNIGAWKAGHKSFKYWLYVLRRKPKITQERT
Ga0335055_0078857_678_911	F011292	AGGAGG	MTPQSFDIDTCKEVVGDARMRVIEAKARQDADNGVMDKPARAEGTYWDVVRSDMEYVVYVTAHHKRLERIQRIKEKA